Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins. - Davide Baù; Alberto J. M. Martin; Catherine Mooney; Alessandro Vullo; Ian Walsh; Gianluca Pollastri (BMC Bioinform., 2006)

Protein Structural Motif Prediction in Multidimensional ø-Psi Space Leads to Improved Secondary Structure Prediction. - Catherine Mooney; Alessandro Vullo; Gianluca Pollastri (J. Comput. Biol., 2006)

Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information. - Gianluca Pollastri; Alberto J. M. Martin; Catherine Mooney; Alessandro Vullo (BMC Bioinform., 2007)

Ab initio and homology based prediction of protein domains by recursive neural networks. - Ian Walsh; Alberto J. M. Martin; Catherine Mooney; Enrico Rubagotti; Alessandro Vullo; Gianluca Pollastri (BMC Bioinform., 2009)

De Novo Protein Subcellular Localization Prediction by N-to-1 Neural Networks. - Catherine Mooney; Yong-Hong Wang; Gianluca Pollastri (CIBB, 2010)

SCLpred: protein subcellular localization prediction by N-to-1 neural networks. - Catherine Mooney; Yong-Hong Wang; Gianluca Pollastri (Bioinform., 2011)

CPPpred: prediction of cell penetrating peptides. - Thérèse A. Holton; Gianluca Pollastri; Denis C. Shields; Catherine Mooney (Bioinform., 2013)

PeptideLocator: prediction of bioactive peptides in protein sequences. - Catherine Mooney; Niall J. Haslam; Thérèse A. Holton; Gianluca Pollastri; Denis C. Shields (Bioinform., 2013)

EpimiRBase: a comprehensive database of microRNA-epilepsy associations. - Catherine Mooney; Brett A. Becker; Rana Raoof; David C. Henshall (Bioinform., 2016)

Effective compiler error message enhancement for novice programming students. - Brett A. Becker; Graham Glanville; Ricardo Iwashima; Claire McDonnell; Kyle Goslin; Catherine Mooney (Comput. Sci. Educ., 2016)

Multi-level Attention-Based Neural Networks for Distant Supervised Relation Extraction. - Linyi Yang; Tin Lok James Ng; Catherine Mooney; Ruihai Dong (AICS, 2017)

Computer Science Identity and Sense of Belonging: A Case Study in Ireland. - Catherine Mooney; Brett A. Becker; Lana Salmon; Eleni E. Mangina (GE@ICSE, 2018)

Using Patient Information for the Prediction of Caregiver Burden in Amyotrophic Lateral Sclerosis. - Anna Antoniadi; Miriam Galvin; Mark Heverin; Orla Hardiman; Catherine Mooney (BCB, 2020)

Prediction of Large for Gestational Age Infants in Overweight and Obese Women at Approximately 20 Gestational Weeks. - Yuhan Du; John Mehegan; Fionnuala M. McAuliffe; Catherine Mooney (BCB, 2020)

Random Forest-based Algorithm for Sleep Spindle Detection in Infant EEG. - Lan Wei; Soraia Ventura; Madeleine M. Lowery; Mary Anne Ryan; Sean Mathieson; Geraldine B. Boylan; Catherine Mooney (EMBC, 2020)

Identifying Features That Are Predictive of Quality of Life in People With Amyotrophic Lateral Sclerosis. - Anna Markella Antoniadi; Miriam Galvin; Mark Heverin; Orla Hardiman; Catherine Mooney (ICHI, 2020)

Exploring Sense of Belonging in Computer Science Students. - Catherine Mooney; Anna Antoniadi; Ioannis Karvelas; Lana Salmon; Brett A. Becker (ITiCSE, 2020)

Sense of Belonging: The Intersectionality of Self-Identified Minority Status and Gender in Undergraduate Computer Science Students. - Catherine Mooney; Brett A. Becker (UKICER, 2020)

SCLpred-EMS: subcellular localization prediction of endomembrane system and secretory pathway proteins by Deep N-to-1 Convolutional Neural Networks. - Manaz Kaleel; Yandan Zheng; Jialiang Chen; Xuanming Feng; Jeremy C. Simpson; Gianluca Pollastri; Catherine Mooney (Bioinform., 2020)

Towards Assessing the Readability of Programming Error Messages. - Brett A. Becker; Paul Denny 001; James Prather; Raymond Pettit; Robert Nix; Catherine Mooney (ACE, 2021)

A Simple, Language-Independent Approach to Identifying Potentially At-Risk Introductory Programming Students. - Brett A. Becker; Catherine Mooney; Amruth N. Kumar; Seán Russell 001 (ACE, 2021)

Explaining large-for-gestational-age births: a random forest classifier with a novel local interpretation method. - Yuhan Du; Anthony R. Rafferty; Fionnuala M. McAuliffe; Catherine Mooney (BCB, 2021)

On Designing Programming Error Messages for Novices: Readability and its Constituent Factors. - Paul Denny 001; James Prather; Brett A. Becker; Catherine Mooney; John Homer; Zachary C. Albrecht; Garrett B. Powell (CHI, 2021)

Development of an explainable clinical decision support system for the prediction of patient quality of life in amyotrophic lateral sclerosis. - Anna Markella Antoniadi; Miriam Galvin; Mark Heverin; Orla Hardiman; Catherine Mooney (SAC, 2021)

Investigating the impact of the COVID-19 pandemic on computing students' sense of belonging. - Catherine Mooney; Brett A. Becker (Inroads, 2021)

Variations in Sense of Belonging in Undergraduate Computing Students Through the COVID-19 Pandemic. - Shamima Nasrin Runa; Brett A. Becker; Catherine Mooney (UKICER, 2022)

Deep-spindle: An automated sleep spindle detection system for analysis of infant sleep spindles. - Lan Wei; Soraia Ventura; Mary Anne Ryan; Sean Mathieson; Geraldine B. Boylan; Madeleine M. Lowery; Catherine Mooney (Comput. Biol. Medicine, 2022)

Spindle-AI: Sleep Spindle Number and Duration Estimation in Infant EEG. - Lan Wei; Soraia Ventura; Sean Mathieson; Geraldine B. Boylan; Madeleine M. Lowery; Catherine Mooney (IEEE Trans. Biomed. Eng., 2022)

Student Sense of Belonging: The Role of Gender Identity and Minoritisation in Computing and Other Sciences. - Shamima Nasrin Runa; Anna Markella Antoniadi; Brett A. Becker; Catherine Mooney (ACE, 2023)

Understanding a post-COVID Drop in the Belongingness of Minoritised Men in an Undergraduate Computer Science Course. - Shamima Nasrin Runa; Andrew McCartan; Brett A. Becker; Catherine Mooney (CompEd (2), 2023)

Transfer Learning-based Seizure Detection on Multiple Channels of Paediatric EEGs. - Lan Wei; Catherine Mooney (EMBC, 2023)

A Machine Learning Approach for Sex and Age Classification of Paediatric EEGs. - Lan Wei; John C. McHugh; Catherine Mooney (EMBC, 2023)

Prediction of Epilepsy Phenotype in Intra-amygdala Kainic Acid Mouse Model of Epilepsy. - Mercy E. Edoho; Omar Mamad; David C. Henshall; Catherine Mooney; Lan Wei (ICBBE, 2023)

Interictal Epileptiform Discharge Classification for the Prediction of Epilepsy Type in Children. - Lan Wei; John C. McHugh; Catherine Mooney (ICBBE, 2023)

Evaluating the Sense of Belonging of Undergraduate Computing Students in the UK and Ireland. - Catherine Mooney; Fiona McNeill; Brett A. Becker (UKICER, 2023)

Sense of Belonging of Undergraduate Computing Students: A Comparative Analysis of University Entry Routes. - Shamima Nasrin Runa; Andrew McCartan; Brett A. Becker; Catherine Mooney (UKICER, 2023)

Machine learning-based clinical decision support systems for pregnancy care: A systematic review. - Yuhan Du; Catherine McNestry; Lan Wei; Anna Markella Antoniadi; Fionnuala M. McAuliffe; Catherine Mooney (Int. J. Medical Informatics, 2023)

An Explainable Transfer Learning Method for EEG-based Seizure Type Classification. - Lan Wei; Catherine Mooney (EMBC, 2024)

An EEG-based Automatic Classification Model for Epilepsy with Explainable Artificial Intelligence. - Lan Wei; Catherine Mooney (ICBET, 2024)

Transfer Learning for the Identification of Paediatric EEGs With Interictal Epileptiform Abnormalities. - Lan Wei; John C. McHugh; Catherine Mooney (IEEE Access, 2024)

Pathways to Belonging: Understanding How University Entry Routes Shape the Sense of Belonging of Undergraduate Computing Students. - Shamima Nasrin Runa; Andrew McCartan; Brett A. Becker; Catherine Mooney (ACM Trans. Comput. Educ., 2024)

Enhancing Cervical Cancer Screening with a Resnet-Based Approach and Interpretability Techniques. - Huina Wang; Lan Wei; Bo Liu; Jianqiang Li 002; Juan Fang; Catherine Mooney (ISBI, 2025)

Automatic Classification and Explanation of Abnormal EEGs Using Signal Images and Spectrograms. - Lan Wei; Catherine Mooney (ISBI, 2025)

Classification System for Predicting Emergent Epilepsy Phenotype in the Intra-Amygdala Kainic Acid Mouse Model of Epilepsy. - Mercy E. Edoho; Omar Mamad; David C. Henshall; Catherine Mooney; Lan Wei (IEEE Trans. Biomed. Eng., 2025)