GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies. - Stephanie M. Gogarten; Tushar Bhangale; Matthew P. Conomos; Cecelia A. Laurie; Caitlin P. McHugh; Ian S. Painter; Xiuwen Zheng 001; David R. Crosslin; David Levine; Thomas Lumley; Sarah C. Nelson; Ken Rice; et al. (Bioinform., 2012)

A high-performance computing toolset for relatedness and principal component analysis of SNP data. - Xiuwen Zheng 001; David Levine; Jess Shen; Stephanie M. Gogarten; Cathy C. Laurie; Bruce S. Weir (Bioinform., 2012)

SeqArray - a storage-efficient high-performance data format for WGS variant calls. - Xiuwen Zheng 001; Stephanie M. Gogarten; Michael F. Lawrence; Adrienne Stilp; Matthew P. Conomos; Bruce S. Weir; Cathy C. Laurie; David Levine (Bioinform., 2017)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)