Cathy H. Wu
Orcid: 0000-0001-6379-8601Affiliations:
- University of Delaware, Newark, DE, USA
According to our database1,
Cathy H. Wu
authored at least 161 papers
between 1990 and 2023.
Collaborative distances:
Collaborative distances:
Awards
ACM Fellow
ACM Fellow 2020, "For contributions to bioinformatics, computational biology, knowledge mining and semantic data integration".
Timeline
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Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on zbmath.org
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on scopus.com
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on orcid.org
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on id.loc.gov
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on dl.acm.org
On csauthors.net:
Bibliography
2023
Bioinform., January, 2023
2022
A knowledge graph representation learning approach to predict novel kinase-substrate interactions.
CoRR, 2022
2021
Nucleic Acids Res., 2021
CoRR, 2021
COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.
Bioinform., 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021
2020
piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Nucleic Acids Res., 2020
2019
Database J. Biol. Databases Curation, 2019
2018
iPTMnet: an integrated resource for protein post-translational modification network discovery.
Nucleic Acids Res., 2018
BMC Medical Informatics Decis. Mak., 2018
BMC Bioinform., 2018
iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.
Database J. Biol. Databases Curation, 2018
Database J. Biol. Databases Curation, 2018
Proceedings of the Emerging Technologies for Education - Third International Symposium, 2018
Pattern Discovery for Wide-Window Open Information Extraction in Biomedical Literature.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
PTM Knowledge Networks and LINCS Multi-Omics Data for Kinase Inhibitor Drug-Analytics in Lung Cancer.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
RESTful API for iPTMnet: An Integrated Resource for Protein Post-translational Modification Network Discovery.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
IEEE ACM Trans. Comput. Biol. Bioinform., 2017
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Nucleic Acids Res., 2017
Nucleic Acids Res., 2017
eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality.
Database J. Biol. Databases Curation, 2017
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
2016
EURASIP J. Bioinform. Syst. Biol., 2016
Enhancing interacting residue prediction with integrated contact matrix prediction in protein-protein interaction.
EURASIP J. Bioinform. Syst. Biol., 2016
Protein-protein interaction prediction based on multiple kernels and partial network with linear programming.
BMC Syst. Biol., 2016
J. Biomed. Semant., 2016
Database J. Biol. Databases Curation, 2016
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph.
Database J. Biol. Databases Curation, 2016
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Database J. Biol. Databases Curation, 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
2015
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Evolutionary Model Selection and Parameter Estimation for Protein-Protein Interaction Network Based on Differential Evolution Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
PLoS Comput. Biol., 2015
Nucleic Acids Res., 2015
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.
Bioinform., 2015
Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.
Database J. Biol. Databases Curation, 2015
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015
Protein-protein interaction network inference from multiple kernels with optimization based on random walk by linear programming.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
Software for pre-processing Illumina next-generation sequencing short read sequences.
Source Code Biol. Medicine, 2014
Integrative Computational and Experimental Approaches to Establish a Post-Myocardial Infarction Knowledge Map.
PLoS Comput. Biol., 2014
Nucleic Acids Res., 2014
A Generalizable NLP Framework for Fast Development of Pattern-based Biomedical Relation Extraction Systems.
BMC Bioinform., 2014
RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
Database J. Biol. Databases Curation, 2014
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.
Database J. Biol. Databases Curation, 2014
Knowledge Representation of Protein PTMs and Complexes in the Protein Ontology: Application to Multi-Faceted Disease Analysis.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
DDI2PPI: an integrated web server for protein-protein interaction and residue contact matrix predictions.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
2013
Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.
BMC Syst. Biol., 2013
A framework for biomedical figure segmentation towards image-based document retrieval.
BMC Syst. Biol., 2013
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.
Database J. Biol. Databases Curation, 2013
Database J. Biol. Databases Curation, 2013
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database J. Biol. Databases Curation, 2013
Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach.
Proceedings of the ACM Conference on Bioinformatics, 2013
An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature.
Proceedings of the ACM Conference on Bioinformatics, 2013
ngsShoRT: A Software for Pre-processing Illumina Short Read Sequences for De Novo Genome Assembly.
Proceedings of the ACM Conference on Bioinformatics, 2013
Proceedings of the AMIA 2013, 2013
2012
Predicting Ligand Binding Residues and Functional Sites Using Multipositional Correlations with Graph Theoretic Clustering and Kernel CCA.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Nucleic Acids Res., 2012
Community annotation and bioinformatics workforce development in concert - Little Skate Genome Annotation Workshops and Jamborees.
Database J. Biol. Databases Curation, 2012
The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
Database J. Biol. Databases Curation, 2012
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
Nucleic Acids Res., 2011
BMC Bioinform., 2011
Bioinform., 2011
Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
2010
Artif. Intell. Medicine, 2010
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.
Adv. Bioinformatics, 2010
Predicting Functional Sites in Biological Sequences Using Canonical Correlation Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010
Predicting ligand binding residues using multi-positional correlations and kernel canonical correlation analysis.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
Prediction of Catalytic Residues in Proteins Using a Consensus of Prediction (CoP) Approach.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010
2009
J. Am. Medical Informatics Assoc., 2009
Proceedings of the Information Retrieval in Biomedicine, 2009
2008
Proceedings of the Wiley Encyclopedia of Computer Science and Engineering, 2008
Nucleic Acids Res., 2008
Functional Annotation of Protein Isoforms and Modified Forms.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
2007
A comparison study on algorithms of detecting long forms for short forms in biomedical text.
BMC Bioinform., 2007
Proceedings of the Workshops Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007
2006
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res., 2006
Research Paper: Quantitative Assessment of Dictionary-based Protein Named Entity Tagging.
J. Am. Medical Informatics Assoc., 2006
Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties.
BMC Bioinform., 2006
2005
BMC Bioinform., 2005
BMC Bioinform., 2005
Literature mining and database annotation of protein phosphorylation using a rule-based system.
Bioinform., 2005
Proceedings of the ACL 2005, 2005
2004
Nucleic Acids Res., 2004
Comput. Biol. Chem., 2004
Comput. Biol. Chem., 2004
2003
iProClass: an integrated database of protein family, function and structure information.
Nucleic Acids Res., 2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
The Protein Information Resource for Functional Genomics and Proteomics.
Proceedings of the Computational Biology and Genome Informatics, 2003
2002
The Protein Information Resource: an integrated public resource of functional annotation of proteins.
Nucleic Acids Res., 2002
Bioinform., 2002
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
2001
DNA sequence classification via an expectation maximization algorithm and neural networks: a case study.
IEEE Trans. Syst. Man Cybern. Part C, 2001
iProClass: an integrated, comprehensive and annotated protein classification database.
Nucleic Acids Res., 2001
Protein Information Resource: a community resource for expert annotation of protein data.
Nucleic Acids Res., 2001
2000
Application of neural networks to biological data mining: a case study in protein sequence classification.
Proceedings of the sixth ACM SIGKDD international conference on Knowledge discovery and data mining, 2000
1999
Int. J. Artif. Intell. Tools, 1999
1998
Bioinform., 1998
1997
Counter-Propagation Neural Networks for Molecular Sequence Classification: Supervised LVQ and Dynamic Node Allocation.
Appl. Intell., 1997
Proceedings of International Conference on Neural Networks (ICNN'97), 1997
1996
A Protein Class Database Organized with ProSite Protein Groups and PIR Superfamilies.
J. Comput. Biol., 1996
Comput. Appl. Biosci., 1996
1995
Neural Networks for Full-Scale Protein Sequence Classification: Sequence Encoding with Singular Value Decomposition.
Mach. Learn., 1995
1993
Classification Neural Networks for Rapid Sequence Annotation and Automated Database Organization.
Comput. Chem., 1993
Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, 1993
1992
Proceedings of the Proceedings Supercomputing '92, 1992
Proceedings of the 1992 ACM/SIGAPP Symposium on Applied Computing: Technological Challenges of the 1990's, 1992
1991
Proceedings of the Conference on Analysis of Neural Network Applications, 1991
Proceedings of the 19th annual conference on Computer Science, 1991
1990
Using an Artificial Neural System to Determine the Knowledge Base of an Expert System.
Proceedings of the 1990 ACM SIGSMALL/PC Symposium on Small Systems, 1990
Proceedings of the IJCNN 1990, 1990
Proceedings of the ACM 18th Annual Computer Science Conference on Cooperation, 1990