Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data. - Sonja Althammer; Juan González-Vallinas; Cecilia Ballaré; Miguel Beato; Eduardo Eyras (Bioinform., 2011)

Differential contribution to gene expression prediction of histone modifications at enhancers or promoters. - Mar González-Ramírez; Cecilia Ballaré; Francesca Mugianesi; Malte Beringer; Alexandra Santanach; Enrique Blanco; Luciano Di Croce (PLoS Comput. Biol., 2021)