Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. - Cecilia Wieder; Clément Frainay; Nathalie Poupin; Pablo Rodríguez-Mier; Florence Vinson; Juliette Cooke; Rachel P. J. Lai; Jacob G. Bundy; Fabien Jourdan; Timothy M. D. Ebbels (PLoS Comput. Biol., 2021)

Single sample pathway analysis in metabolomics: performance evaluation and application. - Cecilia Wieder; Rachel P. J. Lai; Timothy M. D. Ebbels (BMC Bioinform., 2022)

Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181). - Corey Broeckling; Timothy M. D. Ebbels; Ewy A. Mathé; Nicola Zamboni; Cecilia Wieder (Dagstuhl Reports, 2022)

PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. - Cecilia Wieder; Juliette Cooke; Clément Frainay; Nathalie Poupin; Russell Bowler; Fabien Jourdan; Katerina J. Kechris; Rachel P. J. Lai; Timothy M. D. Ebbels (PLoS Comput. Biol., 2024)

Genome scale metabolic network modelling for metabolic profile predictions. - Juliette Cooke; Maxime Delmas; Cecilia Wieder; Pablo Rodríguez-Mier; Clément Frainay; Florence Vinson; Timothy M. D. Ebbels; Nathalie Poupin; Fabien Jourdan (PLoS Comput. Biol., 2024)