MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker Data. - Cédric Arisdakessian; Sean B. Cleveland; Mahdi Belcaid (PEARC, 2020)

Efficient DNA sequence partitioning using probabilistic subsets and hypergraphs. - Mahdi Belcaid; Cédric Arisdakessian; Yuliia Kravchenko (SAC, 2021)

CoCoNet: an efficient deep learning tool for viral metagenome binning. - Cédric Arisdakessian; Olivia D. Nigro; Grieg F. Steward; Guylaine Poisson; Mahdi Belcaid (Bioinform., 2021)

GranatumX: A Community-engaging, Modularized, and Flexible Webtool for Single-cell Data Analysis. - David G. Garmire; Xun Zhu; Aravind Mantravadi; Qianhui Huang; Breck Yunits; Yu Liu 059; Thomas K. Wolfgruber; Olivier Poirion; Tianying Zhao; Cédric Arisdakessian; Stefan Stanojevic; Lana X. Garmire (Genom. Proteom. Bioinform., 2021)

The C-MĀIKI Gateway: A Modern Science Platform for Analyzing Microbiome Data. - Sean B. Cleveland; Cédric Arisdakessian; Craig Nelson; Mahdi Belcaid; Kiana Frank; Gwen A. Jacobs (PEARC, 2022)