PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles. - Federico Fogolari; Ornela Maloku; Cedrix Jurgal Dongmo Foumthuim; Alessandra Corazza; Gennaro Esposito (J. Chem. Inf. Model., 2018)

TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them. - Jan Brezovsky; Aravind Selvaram Thirunavukarasu; Bartlomiej Surpeta; Carlos Eduardo Sequeiros-Borja; Nishita Mandal; Dheeraj Kumar Sarkar; Cedrix Jurgal Dongmo Foumthuim; Nikhil Agrawal (Bioinform., 2022)

Rinmaker: a fast, versatile and reliable tool to determine residue interaction networks in proteins. - Alvise Spanò; Lorenzo Fanton; Davide Pizzolato; Jacopo Moi; Francesco Vinci; Alberto Pesce; Cedrix Jurgal Dongmo Foumthuim; Achille Giacometti; Marta Simeoni (BMC Bioinform., 2023)

Water will Find Its Way: Transport through Narrow Tunnels in Hydrolases. - Carlos Eduardo Sequeiros-Borja; Bartlomiej Surpeta; Aravind Selvaram Thirunavukarasu; Cedrix Jurgal Dongmo Foumthuim; Igor Marchlewski; Jan Brezovsky (J. Chem. Inf. Model., 2024)