Zipper plot: visualizing transcriptional activity of genomic regions. - Francisco Avila Cobos; Jasper Anckaert; Pieter-Jan Volders; Celine Everaert; Dries Rombaut; Jo Vandesompele; Katleen De Preter; Pieter Mestdagh (BMC Bioinform., 2017)

SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups. - Celine Everaert; Pieter-Jan Volders; Annelien Morlion; Olivier Thas; Pieter Mestdagh (BMC Bioinform., 2020)

CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin. - Annelien Morlion; Eva Hulstaert; Marieke Vromman; Jasper Anckaert; Celine Everaert; Jo Vandesompele; Pieter Mestdagh (Frontiers Bioinform., 2022)

Computational deconvolution of DNA methylation data from mixed DNA samples. - Maísa R. Ferro dos Santos; Edoardo Giuili; Andries De Koker; Celine Everaert; Katleen De Preter (Briefings Bioinform., 2024)