MotifGenie: a Python application for searching transcription factor binding sequences using ChIP-Seq datasets. - Çerag Oguztüzün; Pelin Yasar; Kerim Yavuz; Mesut Muyan; Tolga Can (Bioinform., 2021)

Precision Drug Repurposing (PDR): Patient-level modeling and prediction combining foundational knowledge graph with biobank data. - Çerag Oguztüzün; Zhenxiang Gao; Hui Li; Rong Xu (J. Biomed. Informatics, 2025)

KGiA: Drug repurposing through disease-aware knowledge graph augmentation. - Çerag Oguztüzün; Zhenxiang Gao; Hui Li; Rong Xu (J. Biomed. Informatics, 2025)