RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. - Heladia Salgado; Alberto Santos-Zavaleta; Socorro Gama-Castro; Dulce Millán-Zárate; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Ernesto Pérez-Rueda; César Bonavides-Martínez; Julio Collado-Vides (Nucleic Acids Res., 2001)

Genomics of Gene Regulation: The View from Escherichia coli. - Julio Collado-Vides; Gabriel Moreno-Hagelsieb; Ernesto Pérez-Rueda; Heladia Salgado; Araceli M. Huerta; Rosa María Gutiérrez; David A. Rosenblueth; Andrés Christen; Esperanza Benítez-Bellón; Arturo Medrano-Soto; Socorro Gama-Castro; Alberto Santos-Zavaleta; et al. (Gene Regulations and Metabolism, 2002)

The EcoCyc Database. - Peter D. Karp; Monica Riley; Milton H. Saier Jr.; Ian T. Paulsen; Julio Collado-Vides; Suzanne M. Paley; Alida Pellegrini-Toole; César Bonavides-Martínez; Socorro Gama-Castro (Nucleic Acids Res., 2002)

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. - Heladia Salgado; Socorro Gama-Castro; Agustino Martínez-Antonio; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Martín Peralta-Gil; Delfino Garcia-Alonso; Verónica Jiménez-Jacinto; Alberto Santos-Zavaleta; César Bonavides-Martínez; Julio Collado-Vides (Nucleic Acids Res., 2004)

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. - Heladia Salgado; Socorro Gama-Castro; Martín Peralta-Gil; Edgar Díaz-Peredo; Fabiola Sánchez-Solano; Alberto Santos-Zavaleta; Irma Martínez-Flores; Verónica Jiménez-Jacinto; César Bonavides-Martínez; Juan Segura-Salazar; Agustino Martínez-Antonio; Julio Collado-Vides (Nucleic Acids Res., 2006)

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. - Socorro Gama-Castro; Verónica Jiménez-Jacinto; Martín Peralta-Gil; Alberto Santos-Zavaleta; Mónica I. Peñaloza-Spínola; Bruno Contreras-Moreira; Juan Segura-Salazar; Luis Muñiz-Rascado; Irma Martínez-Flores; Heladia Salgado; César Bonavides-Martínez; Cei Abreu-Goodger; et al. (Nucleic Acids Res., 2008)

EcoCyc: A comprehensive view of Escherichia coli biology. - Ingrid M. Keseler; César Bonavides-Martínez; Julio Collado-Vides; Socorro Gama-Castro; Robert P. Gunsalus; D. Aaron Johnson; Markus Krummenacker; Laura M. Nolan; Suzanne M. Paley; Ian T. Paulsen; Martín Peralta-Gil; Alberto D. Santos-Zavaleta; et al. (Nucleic Acids Res., 2009)

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). - Socorro Gama-Castro; Heladia Salgado; Martín Peralta-Gil; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Hilda Solano-Lira; Verónica Jiménez-Jacinto; Verena Weiss; Jair S. García-Sotelo; Alejandra López-Fuentes; Liliana Porrón-Sotelo; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2011)

EcoCyc: a comprehensive database of Escherichia coli biology. - Ingrid M. Keseler; Julio Collado-Vides; Alberto Santos-Zavaleta; Martín Peralta-Gil; Socorro Gama-Castro; Luis Muñiz-Rascado; César Bonavides-Martínez; Suzanne M. Paley; Markus Krummenacker; Tomer Altman; Pallavi Kaipa; Aaron Spaulding; et al. (Nucleic Acids Res., 2011)

EcoCyc: fusing model organism databases with systems biology. - Ingrid M. Keseler; Amanda Mackie; Martín Peralta-Gil; Alberto Santos-Zavaleta; Socorro Gama-Castro; César Bonavides-Martínez; Carol A. Fulcher; Araceli M. Huerta; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2013)

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. - Heladia Salgado; Martín Peralta-Gil; Socorro Gama-Castro; Alberto Santos-Zavaleta; Luis Muñiz-Rascado; Jair S. García-Sotelo; Verena Weiss; Hilda Solano-Lira; Irma Martínez-Flores; Alejandra Medina-Rivera; Gerardo Salgado-Osorio; Shirley Alquicira-Hernández; et al. (Nucleic Acids Res., 2013)

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. - Socorro Gama-Castro; Heladia Salgado; Alberto Santos-Zavaleta; Daniela Ledezma-Tejeida; Luis Muñiz-Rascado; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Irma Martínez-Flores; Lucia Pannier; Jaime Abraham Castro-Mondragón; Alejandra Medina-Rivera; Hilda Solano-Lira; et al. (Nucleic Acids Res., 2016)

Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures. - Javier De Las Rivas; César Bonavides-Martínez; Francisco J. Campos-Laborie (Briefings Bioinform., 2017)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. - Ingrid M. Keseler; Amanda Mackie; Alberto Santos-Zavaleta; Richard Billington; César Bonavides-Martínez; Ron Caspi; Carol A. Fulcher; Socorro Gama-Castro; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; et al. (Nucleic Acids Res., 2017)

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12. - Alberto Santos-Zavaleta; Heladia Salgado; Socorro Gama-Castro; Mishael Sánchez-Pérez; Laura Gómez-Romero; Daniela Ledezma-Tejeida; Jair Santiago García-Sotelo; Kevin Alquicira-Hernández; Luis Muñiz-Rascado; Pablo Peña-Loredo; Cecilia Ishida-Gutiérrez; David A. Velázquez-Ramírez; et al. (Nucleic Acids Res., 2019)