Where Enterprise Architecture and Early Software Engineering Meet: An approach to use cases definition. - Gabriel M. Miranda; César Henrique Bernabé; Lucas A. Santos; Monalessa Perini Barcellos (SBQS, 2018)

GORO 2.0: Evolving an Ontology for Goal-Oriented Requirements Engineering. - César Henrique Bernabé; Vítor E. Silva Souza; Ricardo de Almeida Falbo; Renata S. S. Guizzardi; Carla Silva 001 (ER Workshops, 2019)

iStar2.0-OWL: an Operational Ontology for iStar. - Camilo C. Almendra; Carla Silva 001; Vítor E. Silva Souza; Renata S. S. Guizzardi; César Henrique Bernabé (iStar@ER, 2019)

Using GORO to Provide Ontological Interpretations of iStar Constructs. - César Henrique Bernabé; Pedro Pignaton Negri; Vítor E. Silva Souza; Renata S. S. Guizzardi; Carla Silva 001 (iStar@ER, 2019)

FAIR Data Management to Access Patient Data. - Núria Queralt Rosinach; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Henk Jan van der Wijk; Barend Mons; Marco Roos (DaMaLOS, 2020)

LUMC Clinical Ontology for Biomedical Research. - Núria Queralt-Rosinach; César Henrique Bernabé; Qinqin Long; Rajaram Kaliyaperumal; Marco Roos (ICBO, 2021)

A Goal-Based Method to Support the Process of Making Data FAIR: From Planning to Conceptual Modelling. - César Henrique Bernabé (JOWO, 2021)

Reuse of Design Pattern Measurements for Health Data. - Núria Queralt-Rosinach; Mark D. Wilkinson; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Michel Dumontier; Paul N. Schofield; Marco Roos (JOWO, 2021)

The Use of Foundational Ontologies in Bioinformatics. - César Henrique Bernabé; Núria Queralt-Rosinach; Vítor E. Silva Souza; Luiz Olavo Bonino da Silva Santos; Annika Jacobsen; Barend Mons; Marco Roos (SWAT4HCLS, 2022)

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. - Rajaram Kaliyaperumal; Mark D. Wilkinson; Pablo Alarcón Moreno; Nirupama Benis; Ronald Cornet; Bruna dos Santos Vieira; Michel Dumontier; César Henrique Bernabé; Annika Jacobsen; Clémence M. A. Le Cornec; Mario Prieto Godoy; Núria Queralt-Rosinach; et al. (J. Biomed. Semant., 2022)

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic. - Núria Queralt-Rosinach; Rajaram Kaliyaperumal; César Henrique Bernabé; Qinqin Long; Simone A. Joosten; Henk Jan van der Wijk; Erik Flikkenschild; Kees Burger; Annika Jacobsen; Barend Mons; Marco Roos (J. Biomed. Semant., 2022)

A goal-oriented method for FAIRification planning. - César Henrique Bernabé; Tiago Prince Sales; Erik Schultes; Niek van Ulzen; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (ER (Companion), 2023)

A Method to Improve Alignments Between Domain and Foundational Ontologies. - César Henrique Bernabé; C. Maria Keet; Zubeida Casmod Khan; Zola Mahlaza (FOIS, 2023)

A Method to Facilitate the Identification of FAIRification Objectives. - César Henrique Bernabé; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Marco Roos (ICBO, 2023)

Surveyed common data access policies preferences amongst European Reference Networks. - Alberto Cámara Ballesteros; Nirupama Benis; César Henrique Bernabé; Inés de Oliveira Coelho; Clémence M. A. Le Cornec; Aylin Demir; Bruna dos Santos Vieira; Jose Antonio Ramírez; K. Joeri van der Velde; Shuxin Zhang; Ronald Cornet; Annika Jacobsen; et al. (SWAT4HCLS, 2023)

A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR. - Philip van Damme; Pablo Alarcón Moreno; César Henrique Bernabé; Alberto Cámara Ballesteros; Clémence M. A. Le Cornec; Bruna dos Santos Vieira; K. Joeri van der Velde; Shuxin Zhang; Claudio Carta; Ronald Cornet; Peter A. C. 't Hoen; Annika Jacobsen; et al. (Data Sci. J., 2023)

A FAIR catalog of ontology-driven conceptual models. - Tiago Prince Sales; Pedro Paulo F. Barcelos; Claudenir M. Fonseca; Isadora Valle Sousa; Elena Romanenko; César Henrique Bernabé; Luiz Olavo Bonino da Silva Santos; Mattia Fumagalli; Joshua Kritz; João Paulo A. Almeida; Giancarlo Guizzardi (Data Knowl. Eng., 2023)

The use of foundational ontologies in biomedical research. - César Henrique Bernabé; Núria Queralt-Rosinach; Vítor E. Silva Souza; Luiz Olavo Bonino da Silva Santos; Barend Mons; Annika Jacobsen; Marco Roos (J. Biomed. Semant., 2023)

Building Expertise on FAIR Through Evolving Bring Your Own Data (BYOD) Workshops: Describing the Data, Software, and Management-focused Approaches and Their Evolution. - César Henrique Bernabé; Lieze Thielemans; Rajaram Kaliyaperumal; Claudio Carta; Shuxin Zhang; Celia W. G. van Gelder; Nirupama Benis; Luiz Olavo Bonino da Silva Santos; Ronald Cornet; Bruna dos Santos Vieira; Nawel Lalout; Inês Henriques; et al. (Data Intell., 2024)

Restructuring Knowledge Graphs with Conceptual Models: Implications for Machine Learning Predictions in Drug Repurposing. - César Bernabé; Rosa Zwart; Pablo Perdomo-Quinteiro; Annika Jacobsen; Tiago Prince Sales; Núria Queralt-Rosinach; Katherine Wolstencroft; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (CAiSE (2), 2025)

GO-Plan: A goal-oriented method for FAIRification planning. - César Bernabé; Isadora Valle Sousa; Tiago Prince Sales; Erik Schultes; Niek van Ulzen; Vítor E. Silva Souza; Annika Jacobsen; Luiz Olavo Bonino da Silva Santos; Barend Mons; Marco Roos (Inf. Serv. Use, 2025)