Simulation of the Dynamic Behavior of One-Dimensional Cellular Automata Using Reconfigurable Computing. - Wagner Rodrigo Weinert; César Manuel Vargas Benítez; Heitor S. Lopes; Carlos Raimundo Erig Lima (ARC, 2007)

A parallel genetic algorithm for protein folding prediction using the 3D-HP Side Chain model. - César Manuel Vargas Benítez; Heitor Silvério Lopes (IEEE Congress on Evolutionary Computation, 2009)

Parallel Artificial Bee Colony Algorithm Approaches for Protein Structure Prediction Using the 3DHP-SC Model. - César Manuel Vargas Benítez; Heitor Silvério Lopes (IDC, 2010)

Hierarchical Parallel Genetic Algorithm applied to the three-dimensional HP Side-chain Protein Folding Problem. - César Manuel Vargas Benítez; Heitor Silvério Lopes (SMC, 2010)

Protein structure prediction with the 3D-HP side-chain model using a master-slave parallel genetic algorithm. - César Manuel Vargas Benítez; Heitor Silvério Lopes (J. Braz. Comput. Soc., 2010)

Reconfigurable Hardware Computing for Accelerating Protein Folding Simulations Using the Harmony Search Algorithm and the 3D-HP-Side Chain Model. - César Manuel Vargas Benítez; Marlon Scalabrin; Heitor Silvério Lopes; Carlos Raimundo Erig Lima (ICA3PP (2), 2011)

Molecular Dynamics for Simulating the Protein Folding Process Using the 3D AB Off-Lattice Model. - César Manuel Vargas Benítez; Heitor Silvério Lopes (BSB, 2012)

Parallelism, hybridism and coevolution in a multi-level ABC-GA approach for the protein structure prediction problem. - César Manuel Vargas Benítez; Rafael Stubs Parpinelli; Heitor Silvério Lopes (Concurr. Comput. Pract. Exp., 2012)

Gene Expression Programming for Evolving Two-Dimensional Cellular Automata in a Distributed Environment. - César Manuel Vargas Benítez; Wagner Rodrigo Weinert; Heitor Silvério Lopes (IDC, 2014)

Population-based harmony search using GPU applied to protein structure prediction. - Marlon Scalabrin; Rafael S. Parpinelli; César Manuel Vargas Benítez; Heitor S. Lopes (Int. J. Comput. Sci. Eng., 2014)

Contributions to the study of the protein folding problem using bioinspired computation and molecular dynamics. - César Manuel Vargas Benítez (2015)

An Ecologically-inspired Parallel Approach Applied to the Protein Structure Reconstruction from Contact Maps. - César Manuel Vargas Benítez; Rafael Stubs Parpinelli; Heitor Silvério Lopes (GECCO (Companion), 2016)

A gene expression programming approach for evolving multi-class image classifiers. - Nelson Marcelo Romero Aquino; Manassés Ribeiro; Matheus Gutoski; César Manuel Vargas Benítez; Heitor Silvério Lopes (LA-CCI, 2017)

A deep bidirectional long short-term memory approach applied to the protein secondary structure prediction problem. - Leandro Takeshi F. Hattori; César Manuel Vargas Benítez; Heitor Silvério Lopes (LA-CCI, 2017)

A Novel Approach to Protein Folding Prediction based on Long Short-Term Memory Networks: A Preliminary Investigation and Analysis. - Leandro Takeshi F. Hattori; César Manuel Vargas Benítez; Matheus Gutoski; Nelson Marcelo Romero Aquino; Heitor Silvério Lopes (IJCNN, 2018)

A benchmark of optimally folded protein structures using integer programming and the 3D-HP-SC model. - Leandro Takeshi F. Hattori; Matheus Gutoski; César Manuel Vargas Benítez; Luiz Fernando Nunes; Heitor Silvério Lopes (Comput. Biol. Chem., 2020)

PathMolD-AB: Spatiotemporal pathways of protein folding using parallel molecular dynamics with a coarse-grained model. - Leandro Takeshi Hattori; Bruna Araujo Pinheiro; Rafael Bertolini Frigori; César Manuel Vargas Benítez; Heitor Silvério Lopes (Comput. Biol. Chem., 2020)