On Simultaneous Graph Embedding - Christian A. Duncan; Alon Efrat; Cesim Erten; Stephen G. Kobourov; Joseph S. B. Mitchell (CoRR, 2002)

GraphAEL: Graph Animations with Evolving Layouts. - Cesim Erten; Philip J. Harding; Stephen G. Kobourov; Kevin Wampler; Gary V. Yee (GD, 2003)

Intersection-Free Morphing of Planar Graphs. - Cesim Erten; Stephen G. Kobourov; Chandan Pitta (GD, 2003)

Morphing planar graphs. - Cesim Erten; Stephen G. Kobourov; Chandan Pitta (SCG, 2004)

Exploring the computing literature using temporal graph visualization. - Cesim Erten; Philip J. Harding; Stephen G. Kobourov; Kevin Wampler; Gary V. Yee (Visualization and Data Analysis, 2004)

Simultaneous Embedding of Planar Graphs with Few Bends. - Cesim Erten; Stephen G. Kobourov (J. Graph Algorithms Appl., 2005)

Simultaneous Graph Drawing: Layout Algorithms and Visualization Schemes. - Cesim Erten; Stephen G. Kobourov; Vu Le 004; Armand Navabi (J. Graph Algorithms Appl., 2005)

Simultaneous Embedding of a Planar Graph and Its Dual on the Grid. - Cesim Erten; Stephen G. Kobourov (Theory Comput. Syst., 2005)

Force-Directed Approaches to Sensor Localization. - Alon Efrat; David Forrester; Anand Iyer; Stephen G. Kobourov; Cesim Erten (ALENEX, 2006)

GSPIM: graphical visualization tool for MIPS assembly programming and simulation. - Patrick Borunda; Chris Brewer; Cesim Erten (SIGCSE, 2006)

Colored Simultaneous Geometric Embeddings. - Ulrik Brandes; Cesim Erten; J. Joseph Fowler; Fabrizio Frati; Markus Geyer; Carsten Gutwenger; Seok-Hee Hong 001; Michael Kaufmann 001; Stephen G. Kobourov; Giuseppe Liotta; Petra Mutzel; Antonios Symvonis (COCOON, 2007)

On simultaneous planar graph embeddings. - Peter Braß; Eowyn Cenek; Christian A. Duncan; Alon Efrat; Cesim Erten; Dan Ismailescu; Stephen G. Kobourov; Anna Lubiw; Joseph S. B. Mitchell (Comput. Geom., 2007)

Fixed-Location Circular Arc Drawing of Planar Graphs. - Alon Efrat; Cesim Erten; Stephen G. Kobourov (J. Graph Algorithms Appl., 2007)

A Robust Biclustering Method Based on Crossing Minimization in Bipartite Graphs. - Cesim Erten; Melih Sözdinler (GD, 2008)

Biclustering Expression Data Based on Expanding Localized Substructures. - Cesim Erten; Melih Sözdinler (BICoB, 2009)

A robust localization framework to handle noisy measurements in wireless sensor networks. - Cesim Erten; Ömer Karatas (ISCIS, 2009)

Fully Decentralized, Collaborative Multilateration Primitives for Uniquely Localizing WSNs. - Arda Cakiroglu; Cesim Erten (WASA, 2009)

Crossing minimization in weighted bipartite graphs. - Olca A. Çakiroglu; Cesim Erten; Ömer Karatas; Melih Sözdinler (J. Discrete Algorithms, 2009)

Improving performances of suboptimal greedy iterative biclustering heuristics via localization. - Cesim Erten; Melih Sözdinler (Bioinform., 2010)

Fully Decentralized and Collaborative Multilateration Primitives for Uniquely Localizing WSNs. - Arda Cakiroglu; Cesim Erten (EURASIP J. Wirel. Commun. Netw., 2010)

Force-directed approaches to sensor localization. - Alon Efrat; David Forrester; Anand Iyer; Stephen G. Kobourov; Cesim Erten; Ozan Kilic (ACM Trans. Sens. Networks, 2010)

Colored Simultaneous Geometric Embeddings and Universal Pointsets. - Ulrik Brandes; Cesim Erten; Alejandro Estrella-Balderrama; J. Joseph Fowler; Fabrizio Frati; Markus Geyer; Carsten Gutwenger; Seok-Hee Hong 001; Michael Kaufmann 001; Stephen G. Kobourov; Giuseppe Liotta; Petra Mutzel; et al. (Algorithmica, 2011)

Reliability-Oriented bioinformatic networks visualization. - Ahmet Emre Aladag; Cesim Erten; Melih Sözdinler (Bioinform., 2011)

CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways. - Gamze Abaka; Türker Bíyíkoglu; Cesim Erten (Bioinform., 2013)

SPINAL: scalable protein interaction network alignment. - Ahmet Emre Aladag; Cesim Erten (Bioinform., 2013)

BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks. - Ferhat Alkan; Cesim Erten (Bioinform., 2014)

Constrained Alignments of a Pair of Graphs. - Ferhat Alkan; Türker Bíyíkoglu; Marc Demange; Cesim Erten (CoRR, 2014)

SiPAN: simultaneous prediction and alignment of protein-protein interaction networks. - Ferhat Alkan; Cesim Erten (Bioinform., 2015)

RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications. - Ferhat Alkan; Cesim Erten (Bioinform., 2017)

Structure of conflict graphs in constraint alignment problems and algorithms. - Ferhat Alkan; Türker Bíyíkoglu; Marc Demange; Cesim Erten (Discret. Math. Theor. Comput. Sci., 2019)

MEXCOwalk: mutual exclusion and coverage based random walk to identify cancer modules. - Rafsan Ahmed; Ilyes Baali; Cesim Erten; Evis Hoxha; Hilal Kazan (Bioinform., 2020)

Ranking cancer drivers via betweenness-based outlier detection and random walks. - Cesim Erten; Aissa Houdjedj; Hilal Kazan (BMC Bioinform., 2021)

PersonaDrive: a method for the identification and prioritization of personalized cancer drivers. - Cesim Erten; Aissa Houdjedj; Hilal Kazan; Ahmed Amine Taleb Bahmed (Bioinform., 2022)

Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions. - Ibrahim Berber; Cesim Erten; Hilal Kazan (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Size Should not Matter: Scale-invariant Stress Metrics. - Abu Reyan Ahmed; Cesim Erten; Stephen G. Kobourov; Jonah Lotz; Jacob Miller 001; Hamlet Taraz (CoRR, 2024)

SCITUNA: single-cell data integration tool using network alignment. - Aissa Houdjedj; Yacine Marouf; Mekan Myradov; Süleyman Onur Dogan; Burak Onur Erten; Oznur Tastan; Cesim Erten; Hilal Kazan (BMC Bioinform., 2025)