A recursive QR approach to semi-blind equalization of time-varying MIMO channels. - Sun-Yuan Kung; Chad L. Myers; Xinying Zhang (ICASSP (4), 2004)

Cross-weighted Fisher discriminant analysis for visualization of DNA microarray data. - Xinying Zhang; Chad L. Myers; Sun-Yuan Kung (ICASSP (5), 2004)

Accurate detection of aneuploidies in array CGH and gene expression microarray data. - Chad L. Myers; Maitreya J. Dunham; Sun-Yuan Kung; Olga G. Troyanskaya (Bioinform., 2004)

Visualization-based discovery and analysis of genomic aberrations in microarray data. - Chad L. Myers; Xing Chen; Olga G. Troyanskaya (BMC Bioinform., 2005)

A recursive QR approach to adaptive equalization of time-varying MIMO channels. - Sun-Yuan Kung; Chad L. Myers; Xinying Zhang (Commun. Inf. Syst., 2005)

A scalable method for integration and functional analysis of multiple microarray datasets. - Curtis Huttenhower; Matthew A. Hibbs; Chad L. Myers; Olga G. Troyanskaya (Bioinform., 2006)

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. - Rachel S. G. Sealfon; Matthew A. Hibbs; Curtis Huttenhower; Chad L. Myers; Olga G. Troyanskaya (BMC Bioinform., 2006)

Exploring the functional landscape of gene expression: directed search of large microarray compendia. - Matthew A. Hibbs; David C. Hess; Chad L. Myers; Curtis Huttenhower; Kai Li 001; Olga G. Troyanskaya (Bioinform., 2007)

Context-sensitive data integration and prediction of biological networks. - Chad L. Myers; Olga G. Troyanskaya (Bioinform., 2007)

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. - Curtis Huttenhower; Avi I. Flamholz; Jessica N. Landis; Sauhard Sahi; Chad L. Myers; Kellen L. Olszewski; Matthew A. Hibbs; Nathan O. Siemers; Olga G. Troyanskaya; Hilary A. Coller (BMC Bioinform., 2007)

A Genomewide Functional Network for the Laboratory Mouse. - Yuanfang Guan; Chad L. Myers; Rong Lu; Ihor Lemischka; Carol J. Bult; Olga G. Troyanskaya (PLoS Comput. Biol., 2008)

Characterization of systems-level organization through mining large-scale genetic interaction networks. - Jeremy Bellay; Benjamin VanderSluis; Yungil Kim; Sunayan Bandyopadhyay; Chad L. Myers (GENSiPS, 2009)

An association analysis approach to biclustering. - Gaurav Pandey 002; Gowtham Atluri; Michael S. Steinbach; Chad L. Myers; Vipin Kumar 001 (KDD, 2009)

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. - Curtis Huttenhower; Matthew A. Hibbs; Chad L. Myers; Amy A. Caudy; David C. Hess; Olga G. Troyanskaya (Bioinform., 2009)

Incorporating functional inter-relationships into protein function prediction algorithms. - Gaurav Pandey 002; Chad L. Myers; Vipin Kumar 001 (BMC Bioinform., 2009)

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis. - Matthew A. Hibbs; Chad L. Myers; Curtis Huttenhower; David C. Hess; Kai Li 001; Amy A. Caudy; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Subspace Differential Coexpression Analysis: Problem Definition and a General Approach. - Gang Fang; Rui Kuang; Gaurav Pandey 002; Michael S. Steinbach; Chad L. Myers; Vipin Kumar 001 (Pacific Symposium on Biocomputing, 2010)

DRYGIN: a database of quantitative genetic interaction networks in yeast. - Judice L. Y. Koh; Huiming Ding; Michael Costanzo; Anastasia Baryshnikova; Kiana Toufighi; Gary D. Bader; Chad L. Myers; Brenda J. Andrews; Charles Boone (Nucleic Acids Res., 2010)

A Scalable Approach for Discovering Conserved Active Subnetworks across Species. - Raamesh Deshpande; Shikha Sharma; Catherine M. Verfaillie; Wei-Shou Hu; Chad L. Myers (PLoS Comput. Biol., 2010)

An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions. - Gaurav Pandey 002; Bin Zhang 002; Aaron N. Chang; Chad L. Myers; Jun Zhu; Vipin Kumar 001; Eric E. Schadt (PLoS Comput. Biol., 2010)

Protein Complexes are Central in the Yeast Genetic Landscape. - Magali Michaut; Anastasia Baryshnikova; Michael Costanzo; Chad L. Myers; Brenda J. Andrews; Charles Boone; Gary D. Bader (PLoS Comput. Biol., 2011)

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens. - Omar Wagih; Matej Usaj; Anastasia Baryshnikova; Benjamin VanderSluis; Elena Kuzmin; Michael Costanzo; Chad L. Myers; Brenda J. Andrews; Charles Boone; Leopold Parts (Nucleic Acids Res., 2013)

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing. - Recep Colak; TaeHyung Kim; Magali Michaut; Mark G. F. Sun; Manuel Irimia; Jeremy Bellay; Chad L. Myers; Benjamin J. Blencowe; Philip M. Kim (PLoS Comput. Biol., 2013)

Analysis of Barcode sequence features to find anomalies due to amplification Bias. - Chandrima Sarkar; Raamesh Deshpande; Chad L. Myers (CoRR, 2014)

MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action. - Justin Nelson; Scott W. Simpkins; Hamid Safizadeh; Sheena C. Li; Jeff S. Piotrowski; Hiroyuki Hirano; Yoko Yashiroda; Hiroyuki Osada; Minoru Yoshida; Charles Boone; Chad L. Myers (Bioinform., 2018)

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions. - Scott W. Simpkins; Justin Nelson; Raamesh Deshpande; Sheena C. Li; Jeff S. Piotrowski; Erin H. Wilson; Abraham A. Gebre; Hamid Safizadeh; Reika Okamoto; Mami Yoshimura; Michael Costanzo; Yoko Yashiroda; et al. (PLoS Comput. Biol., 2018)

Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions. - Hamid Safizadeh; Scott W. Simpkins; Justin Nelson; Sheena C. Li; Jeff S. Piotrowski; Mami Yoshimura; Yoko Yashiroda; Hiroyuki Hirano; Hiroyuki Osada; Minoru Yoshida; Charles Boone; Chad L. Myers (J. Chem. Inf. Model., 2021)