On-Line Zone Construction in Arrangements of Lines in the Plane. - Yuval Aharoni; Dan Halperin; Iddo Hanniel; Sariel Har-Peled; Chaim Linhart (WAE, 1999)

The degenerate primer design problem. - Chaim Linhart; Ron Shamir (ISMB, 2002)

An Experimental Study of On-Line Methods for Zone Construction in Arrangements of Lines in the Plane. - Chaim Linhart; Dan Halperin; Iddo Hanniel; Sariel Har-Peled (Int. J. Comput. Geom. Appl., 2003)

EXPANDER - an integrative program suite for microarray data analysis. - Ron Shamir; Adi Maron-Katz; Amos Tanay; Chaim Linhart; Israel Steinfeld; Roded Sharan; Yosef Shiloh; Ran Elkon (BMC Bioinform., 2005)

The Degenerate Primer Design Problem: Theory and Applications. - Chaim Linhart; Ron Shamir (J. Comput. Biol., 2005)

PAKDD Data Mining Competition 2009: New Ways of Using Known Methods. - Chaim Linhart; Guy Harari; Sharon Abramovich; Altina Buchris (PAKDD Workshops, 2009)

Matching with don't-cares and a small number of mismatches. - Chaim Linhart; Ron Shamir (Inf. Process. Lett., 2009)

Faster pattern matching with character classes using prime number encoding. - Chaim Linhart; Ron Shamir (J. Comput. Syst. Sci., 2009)

Discovering motifs in large genomic datasets - Chaim Linhart (2009)

Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences. - Yonit Halperin; Chaim Linhart; Igor Ulitsky; Ron Shamir (RECOMB, 2010)