HipMer: an extreme-scale de novo genome assembler. - Evangelos Georganas; Aydin Buluç; Jarrod Chapman; Steven A. Hofmeyr; Chaitanya Aluru; Rob Egan; Leonid Oliker; Daniel Rokhsar; Katherine A. Yelick (SC, 2015)

Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis. - Sharma V. Thankachan; Chaitanya Aluru; Sriram P. Chockalingam; Srinivas Aluru (RECOMB, 2018)

Identifying Evolutionary Origins of Repeat Domains in Protein Families. - Chaitanya Aluru; Mona Singh 001 (BCB, 2020)

Improved inference of tandem domain duplications. - Chaitanya Aluru; Mona Singh 001 (Bioinform., 2021)

Reconciliation-Based Methods for Identifying the Evolutionary Origins of Tandem Duplications in Repeat Domain Families - Chaitanya Aluru (2022)