EvoFreq: visualization of the Evolutionary Frequencies of sequence and model data. - Chandler Gatenbee; Ryan O. Schenck; Rafael R. Bravo; Alexander R. A. Anderson (BMC Bioinform., 2019)

NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline. - Ryan O. Schenck; Eszter Lakatos; Chandler Gatenbee; Trevor A. Graham; Alexander R. A. Anderson (BMC Bioinform., 2019)

Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization. - Rafael R. Bravo; Etienne Baratchart; Jeffrey West; Ryan O. Schenck; Anna K. Miller; Jill Gallaher; Chandler Gatenbee; David Basanta; Mark Robertson-Tessi; Alexander R. A. Anderson (PLoS Comput. Biol., 2020)

Developing tools for analyzing and viewing multiplexed images. - Sandhya Prabhakaran; Chandler Gatenbee; Alexander R. A. Anderson (Patterns, 2022)

Mistic: An open-source multiplexed image t-SNE viewer. - Sandhya Prabhakaran; Chandler Gatenbee; Mark Robertson-Tessi; Jeffrey West; Amer A. Beg; Jhanelle Gray; Scott Antonia; Robert A. Gatenby; Alexander R. A. Anderson (Patterns, 2022)

The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue. - Philippe Weitz; Masi Valkonen; Leslie Solorzano; Circe Carr; Kimmo Kartasalo; Constance Boissin; Sonja Koivukoski; Aino Kuusela; Dusan Rasic; Yanbo Feng; Sandra Kristiane Sinius Pouplier; Abhinav Sharma; et al. (Medical Image Anal., 2024)