Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks. - Chang Sik Kim (BMC Bioinform., 2007)

Detecting biological associations between genes based on the theory of phase synchronization. - Chang Sik Kim; Pentti Riikonen; Tapio Salakoski (Biosyst., 2008)

A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data. - Chang Sik Kim; Cheol Soo Bae; Hong Joon Tcha (BMC Bioinform., 2008)

RMA with quantile normalization mixes biological signals between different sample groups in microarray data analysis. - Chang Sik Kim; Seungwoo Hwang; Shu-Dong Zhang (BIBM, 2014)

K-mer clustering algorithm using a MapReduce approach. - Chang Sik Kim; Martyn D. Winn; Vipin Sachdeva; Kirk E. Jordan (BIBM, 2014)

Integrative analysis of chemo-transcriptomic profiles for drug-feature specific gene expression signatures. - Chang Sik Kim; Qing Wen; Shu-Dong Zhang (BIBM, 2014)

Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly. - Vipin Sachdeva; Chang Sik Kim; Kirk E. Jordan; Martyn D. Winn (IPDPS Workshops, 2014)

A gene-signature progression approach to identifying candidate small-molecule cancer therapeutics with connectivity mapping. - Qing Wen; Chang Sik Kim; Peter Hamilton; Shu-Dong Zhang (BMC Bioinform., 2016)

K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity. - Chang Sik Kim; Martyn D. Winn; Vipin Sachdeva; Kirk E. Jordan (BMC Bioinform., 2017)

In silico error correction improves cfDNA mutation calling. - Chang Sik Kim; Sumitra Mohan; Mahmood Ayub; Dominic G. Rothwell; Caroline Dive; Ged Brady; Crispin J. Miller (Bioinform., 2019)