Protein-Ligand Empirical Interaction Components for Virtual Screening. - Yuna Yan; Weijun Wang; Zhaoxi Sun; John Z. H. Zhang; Changge Ji (J. Chem. Inf. Model., 2017)

eMolTox: prediction of molecular toxicity with confidence. - Changge Ji; Fredrik Svensson; Azedine Zoufir; Andreas Bender 002 (Bioinform., 2018)

Electrostatic Polarization Effect on Cooperative Aggregation of Full Length Human Islet Amyloid. - Yang Li; Xianwei Wang; Longlong Ren; Xuecheng Cao; Changge Ji; Fei Xia; John Z. H. Zhang (J. Chem. Inf. Model., 2018)

FragRep: A Web Server for Structure-Based Drug Design by Fragment Replacement. - Jinwen Shan; Xiaolin Pan; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2020)

MolGpka: A Web Server for Small Molecule pKa Prediction Using a Graph-Convolutional Neural Network. - Xiaolin Pan; Hao Wang; Cuiyu Li; John Z. H. Zhang; Changge Ji (J. Chem. Inf. Model., 2021)

HobPre: accurate prediction of human oral bioavailability for small molecules. - Min Wei; Xudong Zhang; Xiaolin Pan; Bo Wang; Changge Ji; Yifei Qi; John Z. H. Zhang (J. Cheminformatics, 2022)

AA-Score: a New Scoring Function Based on Amino Acid-Specific Interaction for Molecular Docking. - Xiaolin Pan; Hao Wang; Yueqing Zhang; Xingyu Wang; Cuiyu Li; Changge Ji; John Z. H. Zhang (J. Chem. Inf. Model., 2022)

MolHyb: A Web Server for Structure-Based Drug Design by Molecular Hybridization. - Hao Wang; Xiaolin Pan; Yueqing Zhang; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2022)

MolTaut: A Tool for the Rapid Generation of Favorable Tautomer in Aqueous Solution. - Xiaolin Pan; Fanyu Zhao; Yueqing Zhang; Xingyu Wang; Xudong Xiao; John Z. H. Zhang; Changge Ji (J. Chem. Inf. Model., 2023)

MacGen: A Web Server for Structure-Based Macrocycle Design. - Zhihan Zhang; Dongliang Ke; Chengshan Jin; Weiyu Zhou; Xiaolin Pan; Yueqing Zhang; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2024)

FragGrow: A Web Server for Structure-Based Drug Design by Fragment Growing within Constraints. - Yueqing Zhang; Zhihan Zhang; Dongliang Ke; Xiaolin Pan; Xingyu Wang; Xudong Xiao; Changge Ji (J. Chem. Inf. Model., 2024)