Handling updates of a biological sequence based on Hidden Markov Models. - Changjin Hong; Ahmed H. Tewfik; David H. C. Du (EUSIPCO, 2005)

A Novel Update Propagation Module for the Data Provenance Problem: A Contemplating Vision on Realizing Data Provenance from Models to Storage. - Abed Elhamid Lawabni; Changjin Hong; David Hung-Chang Du; Ahmed H. Tewfik (MSST, 2005)

Handling Updates of a Pairwise Sequence Alignment. - Changjin Hong; Ahmed H. Tewfik (ICASSP (2), 2006)

Designing a tighter searching space for pairwise global sequence alignments over multiple scoring systems. - Changjin Hong; Ahmed H. Tewfik (EUSIPCO, 2007)

Efficient Updating of Biological Sequence Analyses. - Changjin Hong; Ahmed H. Tewfik (IEEE J. Sel. Top. Signal Process., 2008)

Heuristic Reusable Dynamic Programming: Efficient Updates of Local Sequence Alignment. - Changjin Hong; Ahmed H. Tewfik (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Prediction of novel systems components in cell cycle regulation in malaria parasite by subnetwork alignments. - Hong Cai; Changjin Hong; Jianying Gu; Timothy G. Lilburn; Rui Kuang; Yufeng Wang 002 (BIBM, 2012)

Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum. - Hong Cai; Changjin Hong; Jianying Gu; Timothy G. Lilburn; Rui Kuang; Yufeng Wang 002 (BMC Syst. Biol., 2012)

A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum. - Hong Cai; Changjin Hong; Timothy G. Lilburn; Armando L. Rodriguez; Sheng Chen; Jianying Gu; Rui Kuang; Yufeng Wang 002 (BMC Bioinform., 2013)

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. - Changjin Hong; Nathan L. Clement; Spencer Clement; Saher Sue Hammoud; Douglas T. Carrell; Bradley R. Cairns; Quinn Snell; Mark J. Clement; William Evan Johnson (BMC Bioinform., 2013)

Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments. - Hong Cai; Timothy G. Lilburn; Changjin Hong; Jianying Gu; Rui Kuang; Yufeng Wang 002 (BMC Syst. Biol., 2015)