Chao Chen

Orcid: 0000-0003-1703-6483

Affiliations:
  • Stony Brook University, Stony Brook, NY, USA


According to our database1, Chao Chen authored at least 106 papers between 2006 and 2023.

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Bibliography

2023
An integrated LSTM-HeteroRGNN model for interpretable opioid overdose risk prediction.
Artif. Intell. Medicine, January, 2023

SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology.
CoRR, 2023

TopoSemiSeg: Enforcing Topological Consistency for Semi-Supervised Segmentation of Histopathology Images.
CoRR, 2023

Learning to Abstain From Uninformative Data.
CoRR, 2023

Mask and Restore: Blind Backdoor Defense at Test Time with Masked Autoencoder.
CoRR, 2023

Topology-Aware Uncertainty for Image Segmentation.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

MagNET: Modality-Agnostic Network for Brain Tumor Segmentation and Characterization with Missing Modalities.
Proceedings of the Machine Learning in Medical Imaging - 14th International Workshop, 2023

Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images.
Proceedings of the Medical Imaging with Deep Learning, 2023

Learning to Segment from Noisy Annotations: A Spatial Correction Approach.
Proceedings of the Eleventh International Conference on Learning Representations, 2023

Confidence Estimation Using Unlabeled Data.
Proceedings of the Eleventh International Conference on Learning Representations, 2023

Learning Probabilistic Topological Representations Using Discrete Morse Theory.
Proceedings of the Eleventh International Conference on Learning Representations, 2023

Calibrating Uncertainty for Semi-Supervised Crowd Counting.
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

Enhancing Modality-Agnostic Representations via Meta-learning for Brain Tumor Segmentation.
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

Attention-Enhancing Backdoor Attacks Against BERT-based Models.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2023, 2023

Topology-Guided Multi-Class Cell Context Generation for Digital Pathology.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

Backdoor Cleansing with Unlabeled Data.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

2022
Representational coding of overt and covert orienting of visuospatial attention in the frontoparietal network.
NeuroImage, 2022

A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Prediction.
CoRR, 2022

Attention Hijacking in Trojan Transformers.
CoRR, 2022

On the Convergence of Optimizing Persistent-Homology-Based Losses.
CoRR, 2022

Learning Probabilistic Structural Representation for Biomedical Image Segmentation.
CoRR, 2022

A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment.
CoRR, 2022

A Manifold View of Adversarial Risk.
CoRR, 2022

A Topology-Attention ConvLSTM Network and Its Application to EM Images.
CoRR, 2022

Neural Approximation of Extended Persistent Homology on Graphs.
CoRR, 2022

Stability of SGD: Tightness analysis and improved bounds.
Proceedings of the Uncertainty in Artificial Intelligence, 2022

Neural Approximation of Graph Topological Features.
Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

A Study of the Attention Abnormality in Trojaned BERTs.
Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2022

Cycle Representation Learning for Inductive Relation Prediction.
Proceedings of the International Conference on Machine Learning, 2022

Trigger Hunting with a Topological Prior for Trojan Detection.
Proceedings of the Tenth International Conference on Learning Representations, 2022

Learning Topological Interactions for Multi-Class Medical Image Segmentation.
Proceedings of the Computer Vision - ECCV 2022, 2022

Temporal Context Matters: Enhancing Single Image Prediction with Disease Progression Representations.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

GPU Computation of the Euler Characteristic Curve for Imaging Data.
Proceedings of the 38th International Symposium on Computational Geometry, 2022

A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Prediction.
Proceedings of the AMIA 2022, 2022

A Manifold View of Adversarial Risk.
Proceedings of the International Conference on Artificial Intelligence and Statistics, 2022

2021
Multi-Feature Based Network Revealing the Structural Abnormalities in Autism Spectrum Disorder.
IEEE Trans. Affect. Comput., 2021

Image Segmentation with Homotopy Warping.
CoRR, 2021

A Topological View of Rule Learning in Knowledge Graphs.
CoRR, 2021

Persistence Homology for Link Prediction: An Interactive View.
CoRR, 2021

Training Federated GANs with Theoretical Guarantees: A Universal Aggregation Approach.
CoRR, 2021

Topological Detection of Trojaned Neural Networks.
Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021

Predicting COVID-19 Lung Infiltrate Progression on Chest Radiographs Using Spatio-temporal LSTM based Encoder-Decoder Network.
Proceedings of the Medical Imaging with Deep Learning, 7-9 July 2021, Lübeck, Germany., 2021

A Topological-Attention ConvLSTM Network and Its Application to EM Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

3D Topology-Preserving Segmentation with Compound Multi-Slice Representation.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

TopoTxR: A Topological Biomarker for Predicting Treatment Response in Breast Cancer.
Proceedings of the Information Processing in Medical Imaging, 2021

Link Prediction with Persistent Homology: An Interactive View.
Proceedings of the 38th International Conference on Machine Learning, 2021

Learning with Feature-Dependent Label Noise: A Progressive Approach.
Proceedings of the 9th International Conference on Learning Representations, 2021

Topology-Aware Segmentation Using Discrete Morse Theory.
Proceedings of the 9th International Conference on Learning Representations, 2021

Multi-Class Cell Detection Using Spatial Context Representation.
Proceedings of the 2021 IEEE/CVF International Conference on Computer Vision, 2021

Localization in the Crowd with Topological Constraints.
Proceedings of the Thirty-Fifth AAAI Conference on Artificial Intelligence, 2021

2020
Solving Multiple Inference by Minimizing Expected Loss.
Proceedings of the International Conference on Probabilistic Graphical Models, 2020

Deep Variational Instance Segmentation.
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

A Topological Filter for Learning with Label Noise.
Proceedings of the Advances in Neural Information Processing Systems 33: Annual Conference on Neural Information Processing Systems 2020, 2020

Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Error-Bounded Correction of Noisy Labels.
Proceedings of the 37th International Conference on Machine Learning, 2020

Curvature Graph Network.
Proceedings of the 8th International Conference on Learning Representations, 2020

TopoGAN: A Topology-Aware Generative Adversarial Network.
Proceedings of the Computer Vision - ECCV 2020, 2020

Learn Distributed GAN with Temporary Discriminators.
Proceedings of the Computer Vision - ECCV 2020, 2020

Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer.
Proceedings of the Computer Vision - ECCV 2020 Workshops, 2020

Synthetic Learning: Learn From Distributed Asynchronized Discriminator GAN Without Sharing Medical Image Data.
Proceedings of the 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2020

Persistent Homology Based Characterization of the Breast Cancer Immune Microenvironment: A Feasibility Study.
Proceedings of the 36th International Symposium on Computational Geometry, 2020

Persistence Enhanced Graph Neural Network.
Proceedings of the 23rd International Conference on Artificial Intelligence and Statistics, 2020

Local Regularizer Improves Generalization.
Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2019
An Adaptive Markov Random Field for Structured Compressive Sensing.
IEEE Trans. Image Process., 2019

Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types.
CoRR, 2019

Topology-Preserving Deep Image Segmentation.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

Diverse Multiple Prediction on Neuron Image Reconstruction.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Learning Human Cognition via fMRI Analysis Using 3D CNN and Graph Neural Network.
Proceedings of the Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy, 2019

Deep Attentive Feature Learning for Histopathology Image Classification.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Heuristic Search for Homology Localization Problem and Its Application in Cardiac Trabeculae Reconstruction.
Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence, 2019

Taming the Noisy Gradient: Train Deep Neural Networks with Small Batch Sizes.
Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence, 2019

Feature Selection for Facebook Feed Ranking System via a Group-Sparsity-Regularized Training Algorithm.
Proceedings of the 28th ACM International Conference on Information and Knowledge Management, 2019

A Topological Regularizer for Classifiers via Persistent Homology.
Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics, 2019

Point Cloud Processing via Recurrent Set Encoding.
Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

2018
TopoReg: A Topological Regularizer for Classifiers.
CoRR, 2018

Solving M-Modes in Loopy Graphs Using Tree Decompositions.
Proceedings of the International Conference on Probabilistic Graphical Models, 2018

A Region-of-Interest-Reweight 3D Convolutional Neural Network for the Analytics of Brain Information Processing.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

2017
Optimal Topological Cycles and Their Application in Cardiac Trabeculae Restoration.
Proceedings of the Information Processing in Medical Imaging, 2017

Composing Tree Graphical Models with Persistent Homology Features for Clustering Mixed-Type Data.
Proceedings of the 34th International Conference on Machine Learning, 2017

Cardiac Trabeculae Segmentation: an Application of Computational Topology (Multimedia Contribution).
Proceedings of the 33rd International Symposium on Computational Geometry, 2017

2016
An efficient conditional random field approach for automatic and interactive neuron segmentation.
Medical Image Anal., 2016

Video Classification via Weakly Supervised Sequence Modeling.
Comput. Vis. Image Underst., 2016

Solving M-Modes Using Heuristic Search.
Proceedings of the Twenty-Fifth International Joint Conference on Artificial Intelligence, 2016

Clustering High Dimensional Categorical Data via Topographical Features.
Proceedings of the 33nd International Conference on Machine Learning, 2016

2015
Multi-layer stencil creation from images.
Comput. Graph., 2015

Ventricular blood flow analysis using topological methods.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014
Mode Estimation for High Dimensional Discrete Tree Graphical Models.
Proceedings of the Advances in Neural Information Processing Systems 27: Annual Conference on Neural Information Processing Systems 2014, 2014

Optree: A Learning-Based Adaptive Watershed Algorithm for Neuron Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Morphological analysis of the papillary muscles and the trabeculae.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013
An output-sensitive algorithm for persistent homology.
Comput. Geom., 2013

Collaborative Multi Organ Segmentation by Integrating Deformable and Graphical Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Segmenting the Papillary Muscles and the Trabeculae from High Resolution Cardiac CT through Restoration of Topological Handles.
Proceedings of the Information Processing in Medical Imaging, 2013

Computing the M Most Probable Modes of a Graphical Model.
Proceedings of the Sixteenth International Conference on Artificial Intelligence and Statistics, 2013

2012
Annotating Simplices with a Homology Basis and Its Applications.
Proceedings of the Algorithm Theory - SWAT 2012, 2012

The Most Persistent Soft-Clique in a Set of Sampled Graphs.
Proceedings of the 29th International Conference on Machine Learning, 2012

2011
Hardness Results for Homology Localization.
Discret. Comput. Geom., 2011

Perceptual Global Illumination Cancellation in Complex Projection Environments.
Comput. Graph. Forum, 2011

Diffusion runs low on persistence fast.
Proceedings of the IEEE International Conference on Computer Vision, 2011

Enforcing topological constraints in random field image segmentation.
Proceedings of the 24th IEEE Conference on Computer Vision and Pattern Recognition, 2011

2010
Measuring and computing natural generators for homology groups.
Comput. Geom., 2010

Topology Noise Removal for Curve and Surface Evolution.
Proceedings of the Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging, 2010

2009
Algorithms and hardness results in computational homology.
PhD thesis, 2009

2008
Quantifying Homology Classes.
Proceedings of the STACS 2008, 2008

2007
Quantifying Homology Classes II: Localization and Stability
CoRR, 2007

Measuring and Localing Homology Classes
CoRR, 2007

2006
Superimposing Voronoi Complexes for Shape Deformation.
Int. J. Comput. Geom. Appl., 2006


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