Benchmarking CRISPR on-target sgRNA design. - Jifang Yan; Guohui Chuai; Chi Zhou 003; Chen-Yu Zhu; Jing Yang; Chao Zhang 112; Feng Gu; Han Xu; Jia Wei; Qi Liu 019 (Briefings Bioinform., 2018)

iDMer: an integrative and mechanism-driven response system for identifying compound interventions for sudden virus outbreak. - Zhiting Wei; Yuli Gao; Fangliangzi Meng; Xin Chen; Yukang Gong; Chenyu Zhu; Bin Ju; Chao Zhang 112; Zhongmin Liu; Qi Liu 019 (Briefings Bioinform., 2021)

Inter3D: Capture of TAD Reorganization Endows Variant Patterns of Gene Transcription. - Tianyi Ding; Shaliu Fu; Xiaoyu Zhang; Fan Yang 140; Jixing Zhang; Haowen Xu; Jiaqi Yang; Chaoqun Chen; Yibing Shi; Yiran Bai; Wannian Li; Xindi Chang; et al. (Genom. Proteom. Bioinform., 2024)