Using ESTs to improve the accuracy of de novo gene prediction. - Chaochun Wei; Michael R. Brent (BMC Bioinform., 2006)

ITFP: an integrated platform of mammalian transcription factors. - Guangyong Zheng; Kang Tu; Qing Yang; Yun Xiong; Chaochun Wei; Lu Xie; Yangyong Zhu; Yixue Li (Bioinform., 2008)

The combination approach of SVM and ECOC for powerful identification and classification of transcription factor. - Guangyong Zheng; Ziliang Qian; Qing Yang; Chaochun Wei; Lu Xie; Yangyong Zhu; Yixue Li (BMC Bioinform., 2008)

iGepros: an integrated gene and protein annotation server for biological nature exploration. - Guangyong Zheng; Haibo Wang; Chaochun Wei; Yixue Li (BMC Bioinform., 2011)

cGRNexp: a web platform for building combinatorial gene regulation networks based on user-uploaded gene expression datasets. - Huayong Xu; Hui Yu 014; Kang Tu; Qianqian Shi; Chaochun Wei; Yuanyuan Li; Yixue Li (ISB, 2012)

cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets. - Huayong Xu; Hui Yu 014; Kang Tu; Qianqian Shi; Chaochun Wei; Yuan-Yuan Li; Yi-Xue Li (BMC Syst. Biol., 2013)

EUPAN enables pan-genome studies of a large number of eukaryotic genomes. - Zhiqiang Hu; Chen Sun; Kuang-Chen Lu; Xixia Chu; Yue Zhao; Jinyuan Lu; Jianxin Shi; Chaochun Wei (Bioinform., 2017)

Genome-Wide Analysis of the Association of Transposable Elements with Gene Regulation Suggests that Alu Elements Have the Largest Overall Regulatory Impact. - Lu Zeng; Stephen M. Pederson; Danfeng Cao; Zhipeng Qu; Zhiqiang Hu; David L. Adelson; Chaochun Wei (J. Comput. Biol., 2018)

PaSS: a sequencing simulator for PacBio sequencing. - Wenmin Zhang; Ben Jia; Chaochun Wei (BMC Bioinform., 2019)

CDKAM: a taxonomic classification tool using discriminative k-mers and approximate matching strategies. - Van-Kien Bui; Chaochun Wei (BMC Bioinform., 2020)

GESLM algorithm for detecting causal SNPs in GWAS with multiple phenotypes. - Ruiqi Lyu; Jianle Sun; Dong Xu; Qianxue Jiang; Chaochun Wei; Yue Zhang (Briefings Bioinform., 2021)

4D-QSAR, ADMET properties, and molecular dynamics simulations for designing N-substituted urea/thioureas as human glutaminyl cyclase inhibitors. - Chaochun Wei; Haolin Zhang; Lexuan Niu; Qidi Zhong; Hong Yan; Juan Wang (Comput. Biol. Chem., 2024)