Distilling Causal Metaknowledge from Knowledge Graphs. - Yuan Meng; Yancheng Dong; Shixuan Liu; Chaohao Yuan; Yue He 001; Jian Pei 001; Peng Cui 001 (IEEE Data Eng. Bull., 2022)

Functional Protein Design with Local Domain Alignment. - Chaohao Yuan; Songyou Li; Geyan Ye; Yikun Zhang; Long-Kai Huang; Wenbing Huang 001; Wei Liu 005; Jianhua Yao 001; Yu Rong 001 (CoRR, 2024)

Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation. - Yikun Zhang; Geyan Ye; Chaohao Yuan; Bo Han 003; Long-Kai Huang; Jianhua Yao 001; Wei Liu 005; Yu Rong 001 (CoRR, 2024)

Atomas: Hierarchical Adaptive Alignment on Molecule-Text for Unified Molecule Understanding and Generation. - Yikun Zhang; Geyan Ye; Chaohao Yuan; Bo Han 003; Long-Kai Huang; Jianhua Yao 001; Wei Liu 005; Yu Rong 001 (ICLR, 2025)

Annotation-guided Protein Design with Multi-Level Domain Alignment. - Chaohao Yuan; Songyou Li; Geyan Ye; Yikun Zhang; Long-Kai Huang; Wenbing Huang 001; Wei Liu 005; Jianhua Yao 001; Yu Rong 001 (KDD (1), 2025)

A Survey of Graph Transformers: Architectures, Theories and Applications. - Chaohao Yuan; Kangfei Zhao; Ercan Engin Kuruoglu; Liang Wang; Tingyang Xu; Wenbing Huang 001; Deli Zhao; Hong Cheng 001; Yu Rong 001 (CoRR, 2025)

ASD Classification on Dynamic Brain Connectome using Temporal Random Walk with Transformer-based Dynamic Network Embedding. - Suchanuch Piriyasatit; Chaohao Yuan; Ercan Engin Kuruoglu (CoRR, 2025)

Unifying Structural Proximity and Equivalence for Enhanced Dynamic Network Embedding. - Suchanuch Piriyasatit; Chaohao Yuan; Ercan Engin Kuruoglu (CoRR, 2025)