Optimal Observation Time Points in Stochastic Chemical Kinetics. - Charalampos Kyriakopoulos; Verena Wolf (HSB, 2014)

The Influence of Hydroxylation on Maintaining CpG Methylation Patterns: A Hidden Markov Model Approach. - Pascal Giehr; Charalampos Kyriakopoulos; Gabriella Ficz; Verena Wolf; Jörn Walter (PLoS Comput. Biol., 2016)

H(O)TA: estimation of DNA methylation and hydroxylation levels and efficiencies from time course data. - Charalampos Kyriakopoulos; Pascal Giehr; Verena Wolf (Bioinform., 2017)

Lumping of Degree-Based Mean Field and Pair Approximation Equations for Multi-State Contact Processes. - Charalampos Kyriakopoulos; Gerrit Grossmann; Verena Wolf; Luca Bortolussi (CoRR, 2017)

Lumping the Approximate Master Equation for Multistate Processes on Complex Networks. - Gerrit Großmann; Charalampos Kyriakopoulos; Luca Bortolussi; Verena Wolf (QEST, 2018)

A Hybrid HMM Approach for the Dynamics of DNA Methylation. - Charalampos Kyriakopoulos; Pascal Giehr; Alexander Lück; Jörn Walter; Verena Wolf (HSB, 2019)

Stochastic modeling of DNA demethylation dynamics in ESCs. - Charalampos Kyriakopoulos (2019)