Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. - Zailong Wang; Pearlly Yan; Dustin P. Potter; Charis Eng; Tim Hui-Ming Huang; Shili Lin (BMC Bioinform., 2007)

Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma. - Gürkan Bebek; Mohammed Orloff; Charis Eng (J. Clin. Bioinform., 2011)

Visual Analysis of Tracts of Homozygosity in Human Genome. - Sean Reber; Ye Zhao 003; Li Zhang; Mohammed Orloff; Charis Eng (EuroVA@EuroVis, 2013)

Genome-wide tracts of homozygosity and exome analyses reveal repetitive elements with Barrets esophagus/esophageal adenocarcinoma risk. - Visanu Wanchai; Jing Jin; Emine Bircan; Charis Eng; Mohammed Orloff (BMC Bioinform., 2019)

Learning to Detect Brain Lesions from Noisy Annotations. - Davood Karimi; Jurriaan M. Peters; Abdelhakim Ouaalam; Sanjay P. Prabhu; Mustafa Sahin; Darcy A. Krueger; Alexander Kolevzon; Charis Eng; Simon K. Warfield; Ali Gholipour (ISBI, 2020)

Individualized genetic network analysis reveals new therapeutic vulnerabilities in 6, 700 cancer genomes. - Chuang Liu 001; Junfei Zhao; Weiqiang Lu; Yao Dai; Jennifer Hockings; Yadi Zhou; Ruth Nussinov; Charis Eng; Feixiong Cheng (PLoS Comput. Biol., 2020)

Structural and Dynamic Effects of PTEN C-Terminal Tail Phosphorylation. - Iris N. Smith; Jennifer E. Dawson; James Krieger; Stetson Thacker; Ivet Bahar; Charis Eng (J. Chem. Inf. Model., 2022)

Quantitative evaluation of DNA damage repair dynamics to elucidate predictors of autism vs. cancer in individuals with germline PTEN variants. - Ruipeng Wei; Masahiro Hitomi; Tammy Sadler; Lamis Yehia; Daniela Calvetti; Jacob G. Scott; Charis Eng (PLoS Comput. Biol., 2024)