Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression. - Xin He 001; Md. Abul Hassan Samee; Charles Blatti; Saurabh Sinha (PLoS Comput. Biol., 2010)

Motif Enrichment Tool. - Charles Blatti; Saurabh Sinha (Nucleic Acids Res., 2014)

Understanding co-expressed gene sets by identifying regulators and modeling genomic elements - Charles Blatti (2015)

Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks. - Charles Blatti; Saurabh Sinha (Bioinform., 2016)

SigMat: a classification scheme for gene signature matching. - Jinfeng Xiao; Charles Blatti; Saurabh Sinha (Bioinform., 2018)

Comparison of single and module-based methods for modeling gene regulatory networks. - Mikel Hernaez; Charles Blatti; Olivier Gevaert (Bioinform., 2020)

Uncovering Effective Explanations for Interactive Genomic Data Analysis. - Silu Huang; Charles Blatti; Saurabh Sinha; Aditya G. Parameswaran (Patterns, 2020)