JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories. - Charles C. David; Ettayapuram Ramaprasad Azhagiya Singam; Donald J. Jacobs (BMC Bioinform., 2017)

JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit. - Charles C. David; Chris S. Avery; Donald J. Jacobs (BMC Bioinform., 2021)