Where next for the reproducibility agenda in computational biology? - Joanna Lewis; Charles E. Breeze; Jane Charlesworth; Oliver J. Maclaren; Jonathan Cooper (BMC Syst. Biol., 2016)

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies. - Andrew E. Teschendorff; Charles E. Breeze; Shijie C. Zheng; Stephan Beck 002 (BMC Bioinform., 2017)

eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data. - Charles E. Breeze; Alex P. Reynolds; Jenny van Dongen; Ian Dunham; John Lazar; Shane J. Neph; Jeff Vierstra; Guillaume Bourque; Andrew E. Teschendorff; John A. Stamatoyannopoulos; Stephan Beck 002 (Bioinform., 2019)

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI. - Shijie C. Zheng; Charles E. Breeze; Stephan Beck 002; Danyue Dong; Tianyu Zhu; Liang-Xiao Ma; Wei Ye; Guoqing Zhang 006; Andrew E. Teschendorff (Bioinform., 2020)