Assessing phylogenetic motif models for predicting transcription factor binding sites. - John Hawkins; Charles E. Grant; William Stafford Noble; Timothy L. Bailey (Bioinform., 2009)

MEME SUITE: tools for motif discovery and searching. - Timothy L. Bailey; Mikael Bodén; Fabian A. Buske; Martin C. Frith; Charles E. Grant; Luca Clementi; Jingyuan Ren; Wilfred W. Li; William Stafford Noble (Nucleic Acids Res., 2009)

FIMO: scanning for occurrences of a given motif. - Charles E. Grant; Timothy L. Bailey; William Stafford Noble (Bioinform., 2011)

Improved similarity scores for comparing motifs. - Emi Tanaka; Timothy L. Bailey; Charles E. Grant; William Stafford Noble; Uri Keich (Bioinform., 2011)

The MEME Suite. - Timothy L. Bailey; James Johnson; Charles E. Grant; William S. Noble (Nucleic Acids Res., 2015)

MCAST: scanning for cis-regulatory motif clusters. - Charles E. Grant; James Johnson; Timothy L. Bailey; William Stafford Noble (Bioinform., 2016)

MoMo: discovery of statistically significant post-translational modification motifs. - Alice Cheng; Charles E. Grant; William S. Noble; Timothy L. Bailey (Bioinform., 2019)

T-Gene: improved target gene prediction. - Timothy O'Connor; Charles E. Grant; Mikael Bodén; Timothy L. Bailey (Bioinform., 2020)