miROrtho: computational survey of microRNA genes. - Daniel Gerlach; Evgenia V. Kriventseva; Nazim Rahman; Charles E. Vejnar; Evgeni M. Zdobnov (Nucleic Acids Res., 2009)

Computational prediction of microRNA targets: thermodynamic, probabilistic and evolutionary models parameterized by genome-scale experimental data. - Charles E. Vejnar (2012)

miRmap web: comprehensive microRNA target prediction online. - Charles E. Vejnar; Matthias Blum; Evgeny M. Zdobnov (Nucleic Acids Res., 2013)

LabxDB: versatile databases for genomic sequencing and lab management. - Charles E. Vejnar; Antonio J. Giraldez; Pier Luigi Martelli (Bioinform., 2020)