IDPS: A Massively Parallel Heuristic Search Algorithm. - Ambuj Mahanti; Charles J. Daniels (IPPS, 1992)

A SIMD Approach to Parallel Heuristic Search. - Ambuj Mahanti; Charles J. Daniels (Artif. Intell., 1993)

EASy: Expert Authorizations System. - Jonathan Altfeld; Douglas E. Landon; Charles J. Daniels (AAAI/IAAI, Vol. 2, 1996)

The PACRAT system: an extensible WWW-based system for correlated sequence retrieval, storage and analysis. - William C. Ray; Charles J. Daniels (Bioinform., 2001)

Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features. - William C. Ray; Robert S. Munson Jr.; Charles J. Daniels (Bioinform., 2001)

PACRAT: a database and analysis system for archaeal and bacterial intergenic sequence features. - William C. Ray; Charles J. Daniels (Nucleic Acids Res., 2003)