NGS++: a library for rapid prototyping of epigenomics software tools. - Alexei Nordell-Markovits; Charles Joly Beauparlant; Dominique Toupin; Shengrui Wang; Arnaud Droit; Nicolas Gevry (Bioinform., 2013)

rTANDEM, an R/Bioconductor package for MS/MS protein identification. - Frédéric Fournier; Charles Joly Beauparlant; René Paradis; Arnaud Droit (Bioinform., 2014)

metagene Profiles Analyses Reveal Regulatory Element's Factor-Specific Recruitment Patterns. - Charles Joly Beauparlant; Fabien C. Lamaze; Astrid Deschênes; Rawane Samb; Audrey Lemaçon; Pascal Belleau; Steve Bilodeau; Arnaud Droit (PLoS Comput. Biol., 2016)

VEXOR: an integrative environment for prioritization of functional variants in fine-mapping analysis. - Audrey Lemaçon; Charles Joly Beauparlant; Penny Soucy; Jamie Allen; Douglas F. Easton; Peter Kraft; Jacques Simard; Arnaud Droit (Bioinform., 2017)