Adjustment of systematic microarray data biases. - Mónica Benito; Joel S. Parker; Quan Du; Junyuan Wu; Dong Xiang; Charles M. Perou; James Stephen Marron (Bioinform., 2004)

Clustering microarray-derived gene lists through implicit literature relationships. - Mark F. Burkart; Jonathan D. Wren; Jason I. Herschkowitz; Charles M. Perou; Harold R. Garner (Bioinform., 2007)

Merging two gene-expression studies via cross-platform normalization. - Andrey A. Shabalin; Håkon Tjelmeland; Cheng Fan 006; Charles M. Perou; Andrew B. Nobel (Bioinform., 2008)

ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing data. - Christopher R. Cabanski; Keary Cavin; Chris Bizon; Matthew D. Wilkerson; Joel S. Parker; Kirk C. Wilhelmsen; Charles M. Perou; J. S. Marron; D. Neil Hayes (BMC Bioinform., 2012)

Topological Descriptors of Histology Images. - Nikhil Singh 002; Heather D. Couture; J. S. Marron; Charles M. Perou; Marc Niethammer (MLMI, 2014)

ABRA: improved coding indel detection via assembly-based realignment. - Lisle E. Mose; Matthew D. Wilkerson; D. Neil Hayes; Charles M. Perou; Joel S. Parker (Bioinform., 2014)

Hierarchical task-driven feature learning for tumor histology. - Heather D. Couture; J. S. Marron; Nancy E. Thomas; Charles M. Perou; Marc Niethammer (ISBI, 2015)

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer. - Lisle E. Mose; Sara R. Selitsky; Lisa M. Bixby; David L. Marron; Michael D. Iglesia; Jonathan S. Serody; Charles M. Perou; Benjamin Vincent; Joel S. Parker (Bioinform., 2016)

Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology. - Heather D. Couture; J. S. Marron; Charles M. Perou; Melissa A. Troester; Marc Niethammer (MICCAI (2), 2018)

Receiver Operating Characteristic Curves and Confidence Bands for Support Vector Machines. - Daniel J. Luckett; Eric B. Laber; Samer S. El-Kamary; Cheng Fan 006; Ravi Jhaveri; Charles M. Perou; Fatma M. Shebl; Michael R. Kosorok (CoRR, 2018)

Improved indel detection in DNA and RNA via realignment with ABRA2. - Lisle E. Mose; Charles M. Perou; Joel S. Parker (Bioinform., 2019)

Deep Multi-View Learning via Task-Optimal CCA. - Heather D. Couture; Roland Kwitt; J. S. Marron; Melissa A. Troester; Charles M. Perou; Marc Niethammer (CoRR, 2019)

Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: comparison of gene expression profiling approaches. - Arran K. Turnbull; Cigdem Selli; Carlos Martinez-Perez; Anu Fernando; Lorna Renshaw; Jane Keys; Jonine Figueroa; Xiaping He; Maki Tanioka; Alison F. Munro; Lee Murphy; Angie Fawkes; et al. (BMC Bioinform., 2020)

SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references. - Meichen Dong; Aatish Thennavan; Eugene Urrutia; Yun Li; Charles M. Perou; Fei Zou; Yuchao Jiang (Briefings Bioinform., 2021)