iTUPA: an online automated application to perform Topographic-Unit Parsimony Analysis. - Muhsen Hammoud; Charles Morphy D. Santos; João Paulo Gois (Bioinform., 2019)

Comparing Phylogenetic Trees Side by Side Through iPhyloC, a New Interactive Web-Based Framework. - Muhsen Hammoud; Charles Morphy D. Santos; João Paulo Gois (J. Comput. Biol., 2022)

Artificial Intelligence as Catalyst for Biodiversity Understanding. - Charles Morphy D. Santos; João Paulo Gois (Commun. ACM, 2025)