Prediction of protease substrates using sequence and structure features. - David T. Barkan; Daniel R. Hostetter; Sami Mahrus; Ursula Pieper 001; James A. Wells; Charles S. Craik; Andrej Sali (Bioinform., 2010)

GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data. - Marie E. Fahey; Melanie J. Bennett; Cathal Mahon; Stefanie Jäger; Lars Pache; Dhiraj Kumar; Alex Shapiro; Kanury Rao; Sumit K. Chanda; Charles S. Craik; Alan D. Frankel; Nevan J. Krogan (BMC Bioinform., 2011)

Global landscape of HIV-human protein complexes. - Stefanie Jäger; Peter Cimermancic; Natali Gulbahce; Jeffrey R. Johnson; Kathryn E. McGovern; Starlynn C. Clarke; Michael Shales; Gaelle Mercenne; Lars Pache; Kathy Li; Hilda Hernandez; Gwendolyn M. Jang; et al. (Nat., 2012)

Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23. - David T. Barkan; Xiao-li Cheng; Herodion Celino; Tran Trung Tran; Ashok Bhandari; Charles S. Craik; Andrej Sali; Mark L. Smythe (BMC Bioinform., 2016)

Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease Mpro and Papain-like Protease PLpro of SARS-CoV-2. - Lucianna Helene Santos; Thales Kronenberger; Renata G. Almeida; Elany B. Silva; Rafael E. O. Rocha; Joyce C. Oliveira; Luiza V. Barreto; Danielle Skinner; Pavla Fajtová; Miriam A. Giardini; Brendon Woodworth; Conner Bardine; et al. (J. Chem. Inf. Model., 2022)