Quantification of tumour evolution and heterogeneity via Bayesian epiallele detection. - James E. Barrett; Andrew Feber; Javier Herrero; Miljana Tanic; Gareth A. Wilson; Charles Swanton; Stephan Beck 002 (BMC Bioinform., 2017)

Deconvolving convolution neural network for cell detection. - Shan E Ahmed Raza; Khalid AbdulJabbar; Mariam Jamal-Hanjani; Selvaraju Veeriah; John Le Quesne; Charles Swanton; Yinyin Yuan (CoRR, 2018)

Deconvolving Convolutional Neural Network for Cell Detection. - Shan E Ahmed Raza; Khalid AbdulJabbar; Mariam Jamal-Hanjani; Selvaraju Veeriah; John Le Quesne; Charles Swanton; Yinyin Yuan (ISBI, 2019)

Cross-Stream Interactions: Segmentation of Lung Adenocarcinoma Growth Patterns. - Xiaoxi Pan; Hanyun Zhang; Anca-Ioana Grapa; Khalid AbdulJabbar; Shan-E-Ahmed Raza; Ho Kwan Alvin Cheung; Takahiro Karasaki; John Le Quesne; David A. Moore; Charles Swanton; Yinyin Yuan (CMMCA@MICCAI, 2022)

Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity. - Thomas B. K. Watkins; Emma C. Colliver; Matthew R. Huska; Tom L. Kaufmann; Emilia L. Lim; Cody B. Duncan; Kerstin Haase; Peter Van Loo; Charles Swanton; Nicholas McGranahan; Roland F. Schwarz (PLoS Comput. Biol., 2023)

A modular protein language modelling approach to immunogenicity prediction. - Hugh O'Brien; Max Salm; Laura T. Morton; Maciej Szukszto; Felix O'farrell; Charlotte Boulton; Laurence King; Supreet Kaur Bola; Pablo D. Becker; Andrew Craig; Morten Nielsen 001; Yardena Samuels; et al. (PLoS Comput. Biol., 2024)