OOPSE: An object-oriented parallel simulation engine for molecular dynamics. - Matthew A. Meineke; Charles F. Vardeman II; Teng Lin; Christopher J. Fennell; J. Daniel Gezelter (J. Comput. Chem., 2005)

An Ontology Design Pattern for Cartographic Map Scaling. - David Carral; Simon Scheider; Krzysztof Janowicz; Charles Vardeman; Adila Alfa Krisnadhi; Pascal Hitzler (ESWC, 2013)

Abstracting Transport to an Ontology Design Pattern for the Geosciences. - Brandon Whitehead; Benjamin Adams; Mark Schildhauer; Charles Vardeman; Werner Kuhn; Adam Shepherd; Krishna Sinha (WOP, 2013)

Agriculture Data for All - Integrated Tools for Agriculture Data Integration, Analytics, and Sharing. - Jarek Nabrzyski; Cheng Liu; Charles Vardeman; Sandra Gesing; Milan Budhatoki (BigData Congress, 2014)

An Ontology Design Pattern for Material Transformation. - Charles Vardeman; Adila Krisnadhi; Michelle Cheatham; Krzysztof Janowicz; Holly Ferguson; Pascal Hitzler; Aimee Buccellato; Krishnaprasad Thirunarayan; Gary Berg-Cross; Torsten Hahmann (WOP, 2014)

Five stars of Linked Data vocabulary use. - Krzysztof Janowicz; Pascal Hitzler; Benjamin Adams; Dave Kolas; Charles Vardeman (Semantic Web, 2014)

An Ontology Design Pattern for Particle Physics Analysis. - David Carral; Michelle Cheatham; Sünje Dallmeier-Tiessen; Patricia Herterich; Michael D. Hildreth; Pascal Hitzler; Adila Krisnadhi; Kati Lassila-Perini; Elizabeth Sexton-Kennedy; Charles Vardeman; Gordon Watts (WOP, 2015)

An Ontology Design Pattern for Dynamic Relative Relationships. - Holly Ferguson; Adila Krisnadhi; Charles Vardeman (WOP, 2015)

Relative Relationship ODP: Scaling Case. - Holly Ferguson; Charles Vardeman (ISWC (Posters & Demos), 2015)

Smart Container: an Ontology Towards Conceptualizing Docker. - Da Huo; Jaroslaw Nabrzyski; Charles Vardeman (ISWC (Posters & Demos), 2015)

An Ontology Design Pattern towards Preservation of Computational Experiments. - Da Huo; Jarek Nabrzyski; Charles F. Vardeman II (LISC@ISWC, 2015)

A Minimal Ontology Pattern for Life Cycle Assessment Data. - Krzysztof Janowicz; Adila Krisnadhi; Yingjie Hu; Sangwon Suh; Bo Pedersen Weidema; Beatriz Rivela; Johan Tivander; David E. Meyer; Gary Berg-Cross; Pascal Hitzler; Wesley Ingwersen; Brandon Kuczenski; et al. (WOP, 2015)

Capturing an architectural knowledge base utilizing rules engine integration for energy and environmental simulations. - Holly T. Ferguson; Charles F. Vardeman II; Aimee P. C. Buccellato (SpringSim (SimAUD), 2015)

Linked data view methodology and application to BIM alignment and interoperability. - Holly Ferguson; Charles Vardeman; Jarek Nabrzyski (IEEE BigData, 2016)

Linked data platform for building cloud-based smart applications and connecting API access points with data discovery techniques. - Holly Ferguson; Charles Vardeman; Jarek Nabrzyski (IEEE BigData, 2016)

A Modification to the Hazardous Situation ODP to Support Risk Assessment and Mitigation. - Michelle Cheatham; Holly Ferguson; Charles F. Vardeman II; Cogan Shimizu (WOP@ISWC, 2016)

Green Scale Research Tool for Multi-Criteria and Multi-Metric Energy Analysis Performed During the Architectural Design Process. - Holly T. Ferguson; Aimee P. C. Buccellato; Samuel Paolucci; Na Yu; Charles F. Vardeman II (CoRR, 2016)

Computational Environment: An ODP to Support Finding and Recreating Computational Analyses. - Michelle Cheatham; Charles F. Vardeman II; Nazifa Karima; Pascal Hitzler (WOP@ISWC, 2017)

An Ontology Design Pattern and its use case for modeling material transformation. - Charles F. Vardeman II; Adila Alfa Krisnadhi; Michelle Cheatham; Krzysztof Janowicz; Holly Ferguson; Pascal Hitzler; Aimee P. C. Buccellato (Semantic Web, 2017)

Leveraging Wikipedia for Ontology Pattern Population from Text. - Michelle Cheatham; James Lambert; Charles F. Vardeman II (AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering, 2019)

Cyberinfrastructure Center of Excellence Pilot: Connecting Large Facilities Cyberinfrastructure. - Ewa Deelman; Ryan Mitchell; Loïc Pottier; Mats Rynge; Erik Scott; Karan Vahi; Marina Kogan; Jasmine Mann; Tom Gulbransen; Daniel Allen; David Barlow; Anirban Mandal; et al. (eScience, 2019)

Blueprint: Cyberinfrastructure Center of Excellence. - Ewa Deelman; Anirban Mandal; Angela P. Murillo; Jarek Nabrzyski; Valerio Pascucci; Robert Ricci; Ilya Baldin; Susan Sons; Laura Christopherson; Charles Vardeman; Rafael Ferreira da Silva; Jane Wyngaard; et al. (CoRR, 2021)

Hybrid Knowledge Engineering to Build a Global Assassination Dataset. - Abigail Sticha; Steven Broussard; Ian Havenaar; Charles Vardeman; Paul R. Brenner (AIKE, 2022)

A Pattern for Modeling Computational Observations. - Cogan Shimizu; Pascal Hitzler; Charles F. Vardeman II (WOP@ISWC, 2022)

Non-Generative Energy Based Models. - Jacob Piland; Christopher Sweet; Priscila Saboia; Charles F. Vardeman II; Adam Czajka (IJCNN, 2023)

OpenMD: A parallel molecular dynamics engine for complex systems and interfaces. - Cody R. Drisko; Hemanta Bhattarai; Christopher J. Fennell; Kelsey M. Stocker; Charles F. Vardeman II; J. Daniel Gezelter (J. Open Source Softw., 2024)

Trusted Knowledge Extraction for Operations and Maintenance Intelligence. - Kathleen Mealey; Jonathan A. Karr Jr.; Priscila Saboia Moreira; Paul R. Brenner; Charles F. Vardeman II (CoRR, 2025)