The elucidation of protein function from its amino acid sequence. - T. Charles Hodgman (Comput. Appl. Biosci., 1986)

The elucidation of protein function by sequence motif analysis. - T. Charles Hodgman (Comput. Appl. Biosci., 1989)

A new dynamic tool to perform assembly of expressed sequence tags (ESTs). - Robert W. Gill; T. Charles Hodgman; Chris B. Littler; Marcus D. Oxer; Douglas S. Montgomery; Steve Taylor; Philippe Sanseau (Comput. Appl. Biosci., 1997)

Automated management of gene discovery projects. - Steve Taylor; T. Charles Hodgman; Chris B. Littler; Roger A. Sayle; Robert W. Gill; Marcus D. Oxer; C. H. O'Donnell; Andrew Lyall (Bioinform., 1998)

INTERACT: An Object Oriented Protein-Protein Interaction Database. - Karen Eilbeck; Andy Brass; Norman W. Paton; Charlie Hodgman (ISMB, 1999)

Mathematical simulation and analysis of cellular metabolism and regulation. - Igor Goryanin; T. Charles Hodgman; Evgeni Selkov (Bioinform., 1999)

A historical perspective on gene/protein functional assignment. - T. Charles Hodgman (Bioinform., 2000)

Simultaneous Modelling of Metabolic, Genetic and Product-interaction Networks. - Nick S. Juty; Hugh D. Spence; Hans R. Hotz; Haizhou Tang; Igor Goryanin; T. Charles Hodgman (Briefings Bioinform., 2001)

The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000. - Nikolay A. Kolchanov; Charlie Hodgman (Bioinform., 2001)

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. - Michael Hucka; Andrew Finney; Herbert M. Sauro; H. Bolouri; John C. Doyle 001; Hiroaki Kitano; Adam P. Arkin; Benjamin J. Bornstein; Dennis Bray; Athel Cornish-Bowden; Autumn A. Cuellar; Serge Dronov; et al. (Bioinform., 2003)

Characterizing proteolytic cleavage site activity using bio-basis function neural networks. - Rebecca Thomson; T. Charles Hodgman; Zheng Rong Yang; Austin K. Doyle (Bioinform., 2003)

Editorial: The informatics of post-translational modification and its implications for systems biology. - Charlie Hodgman (Briefings Bioinform., 2004)

Constructing an enzyme-centric view of metabolism. - Andrew B. Horne; T. Charles Hodgman; Hugh D. Spence; Andrew R. Dalby (Bioinform., 2004)

The implications for Bioinformatics of integration across physical scales. - T. Charles Hodgman; Y. Ugartechea-Chirino; G. Tansley; I. Dryden (J. Integr. Bioinform., 2006)

A bio-basis function neural network for protein peptide cleavage activity characterisation. - Zheng Rong Yang; Jonathan Dry; Rebecca Thomson; T. Charles Hodgman (Neural Networks, 2006)

Integrative biology - the way forward. - Charlie Hodgman (Briefings Bioinform., 2007)

Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. - Nikolay A. Kolchanov; Tatyana I. Merkulova; Elena V. Ignatieva; Elena A. Ananko; Dmitry Yu. Oshchepkov; Victor G. Levitsky; Gennady V. Vasiliev; Nataly V. Klimova; Vasily M. Merkulov; T. Charles Hodgman (Briefings Bioinform., 2007)

Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions. - Victor G. Levitsky; Elena V. Ignatieva; Elena A. Ananko; Igor I. Turnaev; Tatyana I. Merkulova; Nikolay A. Kolchanov; T. Charles Hodgman (BMC Bioinform., 2007)

A systems biology approach to modelling tea (Camellia sinensis). - Alex Marshall; Sirisha Gollapudi; Jacquie de Silva; Charlie Hodgman (BMC Syst. Biol., 2007)

Genetic algorithm and optimized weight matrix application for peroxisome proliferator response elements recognition: Prerequisites of accuracy growth for wide genome research. - Victor G. Levitsky; Elena V. Ignatieva; Eugenia Aman; Tatyana I. Merkulova; Nikolay A. Kolchanov; T. Charles Hodgman (Intell. Data Anal., 2008)

Inference of Gene Regulatory Networks Using Boolean-Network Inference Methods. - Graham J. Hickman; Charlie Hodgman (J. Bioinform. Comput. Biol., 2009)

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. - Artem Lysenko; Michael Defoin-Platel; Keywan Hassani-Pak; Jan Taubert; Charlie Hodgman; Christopher J. Rawlings; Mansoor A. S. Saqi (BMC Bioinform., 2011)

Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review. - Jianyong Sun; Jonathan M. Garibaldi; Charlie Hodgman (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Inference of the Genetic Network Regulating Lateral Root Initiation in Arabidopsis thaliana. - Daniele Muraro; Ute Voß; Michael Wilson 003; Malcolm Bennett; Helen M. Byrne; Ive De Smet; Charlie Hodgman; John R. King (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

The logic of the floral transition: Reverse-engineering the switch controlling the identity of lateral organs. - Jean-Louis Dinh; Etienne Farcot; Charlie Hodgman (PLoS Comput. Biol., 2017)

Gsmodutils: a python based framework for test-driven genome scale metabolic model development. - James P. Gilbert; Nicole Pearcy; Rupert Norman; Thomas Millat; Klaus Winzer; John R. King; Charlie Hodgman; Nigel P. Minton; Jamie Twycross (Bioinform., 2019)