tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R. - Charlie M. Carpenter; Daniel N. Frank; Kayla Williamson; Jaron Arbet; Brandie D. Wagner; Katerina J. Kechris; Miranda Kroehl (BMC Bioinform., 2021)

PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes. - Charlie M. Carpenter; Weiming Zhang; Lucas A. Gillenwater; Cameron Severn; Tusharkanti Ghosh; Russell Bowler; Katerina J. Kechris; Debashis Ghosh (PLoS Comput. Biol., 2021)

TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes. - Charlie M. Carpenter; Lucas A. Gillenwater; Russell Bowler; Katerina J. Kechris; Debashis Ghosh (BMC Bioinform., 2023)