Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster. - Antonio Marco; Charlotte Konikoff; Timothy L. Karr; Sudhir Kumar 001 (Bioinform., 2009)

FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis. - Sudhir Kumar 001; Charlotte Konikoff; Bernard Van Emden; Christopher Busick; Kailah T. Davis; Shuiwang Ji; Lin-Wei Wu; Hector Ramos; Thomas Brody; Sethuraman Panchanathan; Jieping Ye; Timothy L. Karr; et al. (Bioinform., 2011)

A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis. - Wenlu Zhang; Daming Feng; Rongjian Li; Andrey N. Chernikov; Nikos Chrisochoides; Christopher Osgood; Charlotte Konikoff; Stuart J. Newfeld; Sudhir Kumar 001; Shuiwang Ji (BMC Bioinform., 2013)

myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos. - Ivan Montiel; Charlotte Konikoff; Bremen L. Braun; Mary Packard; L. Sian Gramates; Qian Sun 002; Jieping Ye; Sudhir Kumar 001 (Bioinform., 2014)