ALE: automated label extraction from GEO metadata. - Cory B. Giles; Chase A. Brown; Michael Ripperger; Zane Dennis; Xiavan Roopnarinesingh; Hunter Porter; Aleksandra Perz; Jonathan D. Wren (BMC Bioinform., 2017)

MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations. - Aleksandra Perz; Cory B. Giles; Chase A. Brown; Hunter Porter; Xiavan Roopnarinesingh; Jonathan D. Wren (BMC Bioinform., 2019)

BioVDB: biological vector database for high-throughput gene expression meta-analysis. - Michal J. Winnicki; Chase A. Brown; Hunter Porter; Cory B. Giles; Jonathan D. Wren (Frontiers Artif. Intell., 2024)