Bio: : Phylo - phyloinformatic analysis using Perl. - Rutger A. Vos; Jason Caravas; Klaas Hartmann; Mark A. Jensen; Chase A. Miller (BMC Bioinform., 2011)

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. - Raoul Jean Pierre Bonnal; Jan Aerts; George Githinji; Naohisa Goto; Daniel MacLean; Chase A. Miller; Hiroyuki Mishima; Massimiliano Pagani; Ricardo Ramirez-Gonzalez; Geert Smant; Francesco Strozzi; Rob Syme; et al. (Bioinform., 2012)

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression. - Michele A. Busby; Chip Stewart; Chase A. Miller; Krzysztof R. Grzeda; Gabor T. Marth (Bioinform., 2013)

Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web. - Chase A. Miller; Jon S. Anthony; Michelle M. Meyer; Gabor T. Marth (Bioinform., 2013)