Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs. - Chaya Ben-Zaken Zilberstein; Eleazar Eskin; Zohar Yakhini (Regulatory Genomics, 2004)

Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: A Search Pruned by Expression. - Chaya Ben-Zaken Zilberstein; Michal Ziv-Ukelson (WABI, 2005)

A High-Throughput Approach for Associating MicroRNAs with Their Activity Conditions. - Chaya Ben-Zaken Zilberstein; Michal Ziv-Ukelson; Ron Y. Pinter; Zohar Yakhini (J. Comput. Biol., 2006)

Spotting regulatory elements by micro-arrays. - Chaya Ben-Zaken Zilberstein (2006)

A Study of Accessible Motifs and RNA Folding Complexity. - Ydo Wexler; Chaya Ben-Zaken Zilberstein; Michal Ziv-Ukelson (J. Comput. Biol., 2007)