A Novel Mining Algorithm for Periodic Clustering Sequential Patterns. - Che-Lun Hung; Don-Lin Yang; Yeh-Ching Chung; Ming-Chuan Hung (IEA/AIE, 2006)

Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences. - Che-Lun Hung; Chun-Yuan Lin; Yeh-Ching Chung; Chuan Yi Tang (AINA Workshops, 2008)

A Parallel Algorithm for Three-Profile Alignment Method. - Che-Lun Hung; Chun-Yuan Lin; Yeh-Ching Chung; Chuan Yi Tang (IJCBS, 2009)

CORAL-M: Heuristic coding region alignment method for multiple genome sequences. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (BIBM Workshops, 2010)

UNION: An Efficient Mapping Tool Using UniMark with Non-overlapping Interval Indexing Strategy. - Che-Lun Hung; Chun-Yuan Lin; Yu-Chen Hu (FGIT-DTA/BSBT, 2011)

CloudTSS: A TagSNP Selection Approach on Cloud Computing. - Che-Lun Hung; Yaw-Ling Lin; Guan-Jie Hua; Yu-Chen Hu (FGIT-GDC, 2011)

CUDA-FRESCO: Frequency-Based RE-Sequencing Tool Based on CO-clustering Segmentation by GPU. - Chun-Yuan Lin; Chuan Yi Tang; Sheng-Ta Li; Yaw-Ling Lin; Che-Lun Hung (HPCC, 2011)

Efficient GPGPU-Based Parallel Packet Classification. - Che-Lun Hung; Yaw-Ling Lin; Kuan-Ching Li; Hsiao-Hsi Wang; Shih-Wei Guo (TrustCom, 2011)

Multiple genome sequences alignment algorithm based on coding regions. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (Int. J. Comput. Biol. Drug Des., 2011)

Cloud service of analyzing virus data: A case study for Norovirus. - Che-Lun Hung; Chun-Yuan Lin (CloudCom, 2012)

Efficient protein structure alignment algorithms under the MapReduce framework. - Che-Lun Hung; Yaw-Ling Lin; Chen-En Hsieh; Guan-Jie Hua (CloudCom, 2012)

Using frequency distance filteration for reducing database search workload on GPU-based cloud service. - Sheng-Ta Lee; Chun-Yuan Lin; Che-Lun Hung; Hsuan Ying Huang (CloudCom, 2012)

Parallel UPGMA Algorithm on Graphics Processing Units Using CUDA. - Yu-Rong Chen; Che-Lun Hung; Yu-Shiang Lin; Chun-Yuan Lin; Tien-Lin Lee; Kual-Zheng Lee (HPCC-ICESS, 2012)

Efficient Packet Pattern Matching for Gigabit Network Intrusion Detection Using GPUs. - Che-Lun Hung; Chun-Yuan Lin; Hsiao-Hsi Wang; Chin-Yuan Chang (HPCC-ICESS, 2012)

Preference Utility algorithm using GPGPU architecture. - Che-Lun Hung; Hsiao-Hsi Wang; Jieh-Shan Yeh; Yu-Chen Hu; Chun-Yuan Lin; Yaw-Ling Lin (ICIS, 2013)

A Novel Human-Computer Interface for Browsing Web Data by Leaping Up Web Pages. - Che-Lun Hung; Cherng Chin; Chen-Chun Lai; Ho Cheung Cheung (HCI (13), 2013)

Efficient GPU-Based Algorithm for Aligning Huge Sequence Database. - Chun-Yuan Lin; Che-Lun Hung; Jen-Cheng Huang (HPCC/EUC, 2013)

Parallel botnet detection system by using GPU. - Che-Lun Hung; Hsiao-Hsi Wang (ICIS, 2014)

Drug resistance gene identification algorithm for next-generation sequencing data. - Guan-Jie Hua; Chuan Yi Tang; Che-Lun Hung; Huiru Zheng (BIBM, 2014)

Efficient parallel algorithm for compound comparisons on multi-GPUs. - Chun-Yuan Lin; Chung-Hung Wang; Che-Lun Hung; Yu-Shiang Lin (BIBM, 2014)

Parallel Subcircuit Extraction Algorithm on GPGPUs. - Che-Lun Hung; Hsiao-Hsi Wang; Chun Ting Fu; Chia Shin Ou (HPCC/CSS/ICESS, 2014)

Frequency-based re-sequencing tool for short reads on graphics processing units. - Chun-Yuan Lin; Sheng-Ta Li; Che-Lun Hung (Int. J. Comput. Sci. Eng., 2014)

Fast Parallel Network Packet Filter System based on CUDA. - Che-Lun Hung; Shih-Wei Guo (Int. J. Networked Distributed Comput., 2014)

An efficient parallel-network packet pattern-matching approach using GPUs. - Che-Lun Hung; Chun-Yuan Lin; Hsiao-Hsi Wang (J. Syst. Archit., 2014)

Efficient Brain MRI Segmentation Algorithm on TK1. - Che-Lun Hung; Chun-Yuan Lin; Yuan-Huai Wu; Hsiao-Hsi Wang; Yu-Chen Hu (CIT/IUCC/DASC/PICom, 2015)

Efficient Strategies of Compressing Three-Dimensional Sparse Arrays Based on Intel XEON and Intel XEON Phi Environments. - Chun-Yuan Lin; Huang Ting Yen; Che-Lun Hung (CIT/IUCC/DASC/PICom, 2015)

Cloud computing service framework for bioinformatics tools. - Guan-Jie Hua; Chuan Yi Tang; Che-Lun Hung; Yaw-Ling Lin (BIBM, 2015)

Innovative approach for porting existing CPU program to its CUDA program. - Yu Liu; Yang Hong; Chung-Hung Wang; Sheng-Ta Lee; Chun-Yuan Lin; Che-Lun Hung (BIBM, 2015)

Efficient Parallel Muti-pattern Matching Using GPGPU Acceleration for Packet Filtering. - Che-Lun Hung; Po-Chang Wu; Hsiao-Hsi Wang; Chun-Yuan Lin (HPCC/CSS/ICESS, 2015)

Constructing a Mobility and Acceleration Computing Platform with NVIDIA Jetson TK1. - Min Su; Jianjun Tan; Chun-Yuan Lin; Jin Ye; Chung-Hung Wang; Che-Lun Hung (HPCC/CSS/ICESS, 2015)

CUDA ClustalW: An efficient parallel algorithm for progressive multiple sequence alignment on Multi-GPUs. - Che-Lun Hung; Yu-Shiang Lin; Chun-Yuan Lin; Yeh-Ching Chung; Yi-Fang Chung (Comput. Biol. Chem., 2015)

GPU-UPGMA: high-performance computing for UPGMA algorithm based on graphics processing units. - Yu-Shiang Lin; Chun-Yuan Lin; Che-Lun Hung; Yeh-Ching Chung; Kual-Zheng Lee (Concurr. Comput. Pract. Exp., 2015)

Constructing a Bioinformatics Platform with Web and Mobile Services Based on NVIDIA Jetson TK1. - Chun-Yuan Lin; Jin Ye; Che-Lun Hung; Chung-Hung Wang; Min Su; Jianjun Tan (Int. J. Grid High Perform. Comput., 2015)

High Performance Datafly based Anonymity Algorithm and Its L-Diversity. - Zhi-ting Yu; Quan Qian; Chun-Yuan Lin; Che-Lun Hung (Int. J. Grid High Perform. Comput., 2015)

Efficient parallel UPGMA algorithm based on multiple GPUs. - Che-Lun Hung; Chun-Yuan Lin; Fu-Che Wu; Yu-Wei Chan (BIBM, 2016)

Parallel image dehazing algorithm based on GPU using fuzzy system and hybird evolution algorithm. - Che-Lun Hung; Ren-You Yan; Hsiao-Hsi Wang (SNPD, 2016)

Efficient bit-parallel subcircuit extraction using CUDA. - Che-Lun Hung; Chun-Yuan Lin; Chia Shin Ou; Yuan-Hong Tseng; Po-Yen Hung; Shipeng Li; Chun Ting Fu (Concurr. Comput. Pract. Exp., 2016)

GPU-based parallel fuzzy c-mean clustering model via genetic algorithm. - Che-Lun Hung; Yuan-Huai Wu (Concurr. Comput. Pract. Exp., 2016)

Embedded multicore computing and applications. - Frédéric Magoulès; Che-Lun Hung; Hai Jiang; Jia Hu 001 (Concurr. Comput. Pract. Exp., 2016)

Efficient parallelised search engine based on virtual cluster. - Che-Lun Hung; Chun-Yuan Lin (Int. J. Comput. Sci. Eng., 2016)

A simple algorithm for identifying integrons and gene cassettes in bacteria on next generation sequencing data. - Guan-Jie Hua; Che-Lun Hung; Chuan Yi Tang; Huiru Zheng (Int. J. Data Min. Bioinform., 2016)

Bioinformatics tools with deep learning based on GPU. - Che-Lun Hung; Chuan Yi Tang (BIBM, 2017)

A Supervised Hybrid Classifier for Brain Tissues and White Matter Lesions on Multispectral MRI. - Hsian-Min Chen; Hsin Che Wang; Yung-Chieh Chang; Jyh Wen Chai; Clayton Chi-Chang Chen; Che-Lun Hung; Chein-I Chang (ISPAN-FCST-ISCC, 2017)

Cloud Computing Model for Analyzing Antibiotic Usage from the National Health Insurance Research Database. - Che-Lun Hung; Ching-Heng Lin; Sheng-Ya Lu; Yi-Chia Kao; Li-Ying Li (ISPAN-FCST-ISCC, 2017)

Multi-level Grid Based Clustering and GPU Parallel Implementations. - Quan Qian; Shuai Zhao; Chao-Jie Xiao; Che-Lun Hung (ISPAN-FCST-ISCC, 2017)

GPU-based Gray-Level Co-occurrence Matrix for Extracting Features from Magnetic Resonance Images. - Hsin-Yi Tsai; Hanyu Zhang; Che-Lun Hung; Hsian-Min Chen (ISPAN-FCST-ISCC, 2017)

GPU-Accelerated Features Extraction From Magnetic Resonance Images. - Hsin-Yi Tsai; Hanyu Zhang; Che-Lun Hung; Geyong Min (IEEE Access, 2017)

Parallel genetic-based algorithm on multiple embedded graphic processing units for brain magnetic resonance imaging segmentation. - Che-Lun Hung; Yuan-Huai Wu (Comput. Electr. Eng., 2017)

Embedded multi-core computing and applications. - Che-Lun Hung; Frédéric Magoulès; Meikang Qiu; Robert C. Hsu; Chun-Yuan Lin (J. Supercomput., 2017)

Compressing three-dimensional sparse arrays using inter- and intra-task parallelization strategies on Intel Xeon and Xeon Phi. - Chun-Yuan Lin; Huang Ting Yen; Che-Lun Hung (J. Supercomput., 2017)

An Efficient GPU-Based Multiple Pattern Matching Algorithm for Packet Filtering. - Che-Lun Hung; Chun-Yuan Lin; Po-Chang Wu (J. Signal Process. Syst., 2017)

Using Deep Learning to Identify Cell and Particle in Live-Cell Time-lapse Images. - Hui-Jun Cheng; Chun-Yuan Lin; Cheng-Xian Wu; Che-Lun Hung; Wei-Hsiang Chen; Chuan Yi Tang (BIBM, 2018)

Chronic Kidney Disease Survival Prediction with Artificial Neural Networks. - Hanyu Zhang; Che-Lun Hung; William Cheng-Chung Chu; Ping-Fang Chiu; Chuan Yi Tang (BIBM, 2018)

A GPU-based Bit-Parallel Multiple Pattern Matching Algorithm. - Che-Lun Hung; Tzu-Hung Hsu; Hsiao-Hsi Wang; Chun-Yuan Lin (HPCC/SmartCity/DSS, 2018)

A Deep Learning Models for Blind Guidance by Integrating CNN and ELM. - Hsin-Yi Tsai; Hanyu Zhang; Che-Lun Hung; Fang-Rong Hsu (HPCC/SmartCity/DSS, 2018)

Improvement of Accuracy of Well-Known Convoluational Neural Networks by Efficient Hybrid Strategy. - Ren-You Yan; Che-Lun Hung; Chun-Yuan Lin; Hsiao-Hsi Wang (I-SPAN, 2018)

Performance of Convolution Neural Network based on Multiple GPUs with Different Data Communication Models. - Che-Lun Hung; Yi-Yang Lin; Chuan Yi Tang; Chilung Wang; Ming-Chiang Chen (SNPD, 2018)

A multi-layer information dispersal based encryption algorithm and its application for access control. - Quan Qian; Zhi-ting Yu; Rui Zhang; Che-Lun Hung (Sustain. Comput. Informatics Syst., 2018)

A Review of Deep Learning in Computer-Aided Drug Design. - Chih-Hung Chang; Che-Lun Hung; Chuan Yi Tang (BIBM, 2019)

Optimization of GPU Memory Usage for Training Deep Neural Networks. - Che-Lun Hung; Chine-fu Hsin; Hsiao-Hsi Wang; Chuan Yi Tang (I-SPAN, 2019)

GPU-Based Texture Analysis approach for Mammograms Institute of Biomedical Informatics. - Che-Lun Hung; Chun-Yuan Lin (BIBM, 2020)

Special issue on recent advances in data science and systems. - Longzhi Yang; Jia Hu 001; Che-Lun Hung (Expert Syst. J. Knowl. Eng., 2021)

Fatty Liver Diagnosis Using Deep Learning in Ultrasound Image. - Chun-Hsien Wu; Che-Lun Hung; Teng-Yu Lee; Chun-Ying Wu; William Cheng-Chung Chu (ICDH, 2022)

Macular Holes Detection Using Deep Learning on Optical Coherence Tomography Images. - Che-Lun Hung; Keng-Hung Lin; Yu-Kai Lee; ChunHsien Lin; Yin-Te Tsai (BIBM, 2023)

Fuzzy Querying in the Cloud-based Environment for Data Stream-driven Predictive Maintenance in AGV-enabled Smart Factories. - Bozena Malysiak-Mrozek; Dominik Romanów; Piotr Grzesik; Pawel Benecki; Alexandre Niyomugaba; Theodore Habimana; Daniel Kostrzewa; Krzysztof Tokarz; Che-Lun Hung; Dariusz Mrozek (IEEE Big Data, 2024)

Decoding the Granular Puzzle of Macromolecules: Efficient 3D Protein Structure Alignment in the Age of Big Data with Apache Spark. - Bozena Malysiak-Mrozek; Paulina Pawlowicz; Vaidy S. Sunderam; Che-Lun Hung; Andrzej Kwiecien; Dariusz Mrozek (IEEE Big Data, 2024)

A Novel End-to-End Ensemble UNet Network Based on Edge Computing for Tool Wear Detection. - Jianwen Chen; Meng-Shiun Tsai; Wan-Ju Lin; Che-Lun Hung (CACML, 2024)

Enhancing Cutting Sound Quality in Tool Wear Monitoring via Hybrid Domain Loss UNet Network. - Jian Wen Chen; Meng-Shiun Tsai; Che-Lun Hung (COMPSAC, 2024)

By Machine Learning Techniques Predicting Post-COVID-19 Condition. - Pei-Rong Huang; Chih-Hung Chang; Wen-Ching Chen; Che-Lun Hung; Po-Yu Liu; Ting-Kuang Yeh; Hsiu-Wen Wang; Yu-Chun Yen; William Cheng-Chung Chu (COMPSAC, 2024)

Towards an Effective Tool Wear Monitoring System with an AI Model Management Platform. - Jian Wen Chen; Meng-Shiun Tsai; Che-Lun Hung (INDIN, 2024)

Interpreting Industrial IoT Data Streams Through Fuzzy Querying With Hysteretic Fuzzy Sets on Apache Kafka. - Bozena Malysiak-Mrozek; Bartlomiej Ryba; Marek Moleda; Che-Lun Hung; Witold Pedrycz; Weiping Ding 001; Dariusz Mrozek (IEEE Trans. Fuzzy Syst., 2024)

Promoting Accurate Image Reconstruction via Synthetic Noise for Unsupervised Screw Anomaly Detection and Location. - Jianwen Chen; Wan-Ju Lin; Kuan-Ming Li; Dariusz Mrozek; Che-Lun Hung (IEEE Trans. Instrum. Meas., 2025)

Edge-Cloud deep learning computing for detecting heart failure with preserved ejection fraction on cardiac ultrasound. - Tse-Hsien Lu; Wu-Chun Chung; Chung-Lieh Hung; Che-Lun Hung (Expert Syst. Appl., 2026)