PseudoLasso: leveraging read alignment in homologous regions to correct pseudogene expression estimates via RNASeq. - Chelsea J.-T. Ju; Zhuangtian Zhao; Wei Wang 010 (BCB, 2014)

Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mers. - Chelsea J.-T. Ju; Ruirui Li 002; Zhengliang Wu; Jyun-Yu Jiang; Zhao Yang; Wei Wang 010 (BCB, 2017)

AZTEC: A Cloud-based Computational Platform to Integrate Biomedical Resources. - Patrick Tan; Yichao Zhou 001; Xinxin Huang; Giuseppe M. Mazzeo; Chelsea Ju (ICDE, 2017)

Aztec: A Platform to Render Biomedical Software Findable, Accessible, Interoperable, and Reusable. - Wei Wang 010; Brian Bleakley; Chelsea Ju; Vincent Kyi; Patrick Tan; Howard Choi; Xinxin Huang; Yichao Zhou 001; Justin Wood; Ding Wang; Alex A. T. Bui; Peipei Ping (CoRR, 2017)

Efficient Approach to Correct Read Alignment for Pseudogene Abundance Estimates. - Chelsea J.-T. Ju; Zhuangtian Zhao; Wei Wang 010 (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Inferring Microbial Communities for City Scale Metagenomics Using Neural Networks. - Guangyu Zhou; Jyun-Yu Jiang; Chelsea J.-T. Ju; Wei Wang 010 (BIBM, 2018)

CORALS: Who Are My Potential New Customers? Tapping into the Wisdom of Customers' Decisions. - Ruirui Li 002; Jyun-Yu Jiang; Chelsea J.-T. Ju; Wei Wang 010 (WSDM, 2019)

Multifaceted protein-protein interaction prediction based on Siamese residual RCNN. - Muhao Chen 001; Chelsea J.-T. Ju; Guangyu Zhou; Xuelu Chen; Tianran Zhang; Kai-Wei Chang; Carlo Zaniolo; Wei Wang 010 (Bioinform., 2019)

Bio-JOIE: Joint Representation Learning of Biological Knowledge Bases. - Junheng Hao; Chelsea J.-T. Ju; Muhao Chen 001; Yizhou Sun; Carlo Zaniolo; Wei Wang 010 (BCB, 2020)

MARU: Meta-context Aware Random Walks for Heterogeneous Network Representation Learning. - Jyun-Yu Jiang; Zeyu Li 001; Chelsea J.-T. Ju; Wei Wang 010 (CIKM, 2020)

Non-local convolutional neural networks (nlcnn) for speaker recognition. - Haici Yang; Hongda Mao; Ruirui Li 002; Chelsea J.-T. Ju; Oguz Elibol (CoRR, 2020)

Fusion of Embeddings Networks for Robust Combination of Text Dependent and Independent Speaker Recognition. - Ruirui Li 002; Chelsea J.-T. Ju; Zeya Chen; Hongda Mao; Oguz Elibol; Andreas Stolcke (Interspeech, 2021)

JEDI: circular RNA prediction based on junction encoders and deep interaction among splice sites. - Jyun-Yu Jiang; Chelsea J.-T. Ju; Junheng Hao; Muhao Chen 001; Wei Wang 010 (Bioinform., 2021)

Clinical Named Entity Recognition using Contextualized Token Representations. - Yichao Zhou 001; Chelsea Ju; J. Harry Caufield; Kevin Shih; Calvin Yu-Chian Chen; Yizhou Sun; Kai-Wei Chang; Peipei Ping; Wei Wang 010 (CoRR, 2021)

Adversarial Reweighting for Speaker Verification Fairness. - Minho Jin; Chelsea Ju; Zeya Chen; Yi-Chieh Liu; Jasha Droppo; Andreas Stolcke (INTERSPEECH, 2022)

Post-Training Embedding Alignment for Decoupling Enrollment and Runtime Speaker Recognition Models. - Chenyang Gao; Brecht Desplanques; Chelsea J.-T. Ju; Aman Chadha; Andreas Stolcke (ICASSP, 2024)