A system for coreference resolution for the clinical narrative. - Jiaping Zheng; Wendy Webber Chapman; Timothy A. Miller; Chen Lin 002; Rebecca S. Crowley; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2012)

Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records. - Chen Lin 002; Elizabeth W. Karlson; Helena Canhão; Timothy A. Miller; Dmitriy Dligach; Pei J. Chen; Raúl N. Pérez; Yuanyuan Shen; Michael E. Weinblatt; Nancy A. Shadick; Robert M. Plenge; Guergana Savova (AMIA, 2013)

Discovering Time Expressions in Clinical Text. - Timothy A. Miller; Dmitriy Dligach; Steven Bethard; Sameer Pradhan; Chen Lin 002; Guergana K. Savova (AMIA, 2013)

Discovering Temporal Narrative Containers in Clinical Text. - Timothy Miller 002; Steven Bethard; Dmitriy Dligach; Sameer Pradhan; Chen Lin 002; Guergana Savova (BioNLP@ACL, 2013)

Descending-Path Convolution Kernel for Syntactic Structures. - Chen Lin 002; Timothy Miller 002; Alvin Kho; Steven Bethard; Dmitriy Dligach; Sameer Pradhan; Guergana Savova (ACL (2), 2014)

Temporal Annotation in the Clinical Domain. - William F. Styler IV; Steven Bethard; Sean Finan; Martha Palmer; Sameer Pradhan; Piet C. de Groen; Bradley James Erickson; Timothy Miller 002; Chen Lin 002; Guergana K. Savova; James Pustejovsky (Trans. Assoc. Comput. Linguistics, 2014)

Extracting Time Expressions from Clinical Text. - Timothy Miller 002; Steven Bethard; Dmitriy Dligach; Chen Lin 002; Guergana Savova (BioNLP@IJCNLP, 2015)

Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. - Chen Lin 002; Elizabeth W. Karlson; Dmitriy Dligach; Monica P. Ramirez; Timothy A. Miller; Huan Mo; Natalie S. Braggs; Andrew Cagan; Vivian S. Gainer; Joshua C. Denny; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2015)

Feature Portability in Cross-domain Clinical Coreference. - Timothy A. Miller; Dmitriy Dligach; Chen Lin 002; Steven Bethard; Guergana Savova (AMIA, 2016)

Improving Temporal Relation Extraction with Training Instance Augmentation. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Guergana Savova (BioNLP@ACL, 2016)

Multilayered temporal modeling for the clinical domain. - Chen Lin 002; Dmitriy Dligach; Timothy A. Miller; Steven Bethard; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2016)

DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. - Guergana Savova; Eugene Tseytlin; Sean Finan; Melissa Castine; Timothy A. Miller; Olga Medvedeva; David Harris 004; Harry Hochheiser; Chen Lin 002; Girish Chavan; Rebecca Jacobson (AMIA, 2017)

Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Guergana Savova (BioNLP, 2017)

Neural Temporal Relation Extraction. - Dmitriy Dligach; Timothy Miller 002; Chen Lin 002; Steven Bethard; Guergana Savova (EACL (2), 2017)

Towards generalizable entity-centric clinical coreference resolution. - Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Chen Lin 002; Guergana Savova (J. Biomed. Informatics, 2017)

Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Hadi Amiri; Steven Bethard; Guergana Savova (Louhi@EMNLP, 2018)

ADEPT: An End-to-End System for High-Throughput Pharmacovigilance. - Alon Geva; Jason P. Stedman; Guergana Savova; Chen Lin 002; Shannon F. Manzi; Paul Avillach; Kenneth D. Mandl (AMIA, 2018)

Extracting Relations between Radiotherapy Treatment Details. - Danielle S. Bitterman; Timothy Miller 002; David Harris 004; Chen Lin 002; Sean Finan; Jeremy L. Warner; Raymond H. Mak; Guergana Savova (ClinicalNLP@EMNLP, 2020)

Defining and Learning Refined Temporal Relations in the Clinical Narrative. - Kristin Wright-Bettner; Chen Lin 002; Timothy Miller 002; Steven Bethard; Dmitriy Dligach; Martha Palmer; James H. Martin; Guergana Savova (LOUHI@EMNLP, 2020)

A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Farig Sadeque; Steven Bethard; Guergana Savova (BioNLP, 2020)

Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources. - Alon Geva; Steven H. Abman; Shannon F. Manzi; Dunbar D. Ivy; Mary Mullen; John Griffin; Chen Lin 002; Guergana K. Savova; Kenneth D. Mandl (J. Am. Medical Informatics Assoc., 2020)

Does BERT need domain adaptation for clinical negation detection? - Chen Lin 002; Steven Bethard; Dmitriy Dligach; Farig Sadeque; Guergana Savova; Timothy A. Miller (J. Am. Medical Informatics Assoc., 2020)

EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Guergana Savova (BioNLP@NAACL-HLT, 2021)