Substituting Gadolinium in Brain MRI Using DeepContrast. - Haoran Sun; Xueqing Liu 002; Xinyang Feng; Chen Liu 020; Nanyan Zhu; Sabrina J. Gjerswold-Selleck; Hong-Jian Wei; Pavan S. Upadhyayula; Angeliki Mela; Cheng-Chia Wu; Peter D. Canoll; Andrew F. Laine; et al. (ISBI, 2020)

Segmentation with Residual Attention U-Net and an Edge-Enhancement Approach Preserves Cell Shape Features. - Nanyan Zhu; Chen Liu 020; Zakary S. Singer; Tal Danino; Andrew F. Laine; Jia Guo (CoRR, 2020)

Deep Learning Identifies Neuroimaging Signatures Of Alzheimer's Disease Using Structural And Synthesized Functional Mri Data. - Nanyan Zhu; Chen Liu 020; Xinyang Feng; Dipika Sikka; Sabrina J. Gjerswold-Selleck; Scott A. Small; Jia Guo (ISBI, 2021)

Segmentation with Residual Attention U-Net and an Edge-Enhancement Approach Preserves Cell Shape Features. - Nanyan Zhu; Chen Liu 020; Britney Forsyth; Zakary S. Singer; Andrew F. Laine; Tal Danino; Jia Guo (EMBC, 2022)

Assessing Neural Network Representations During Training Using Noise-Resilient Diffusion Spectral Entropy. - Danqi Liao; Chen Liu 020; Benjamin W. Christensen; Alexander Tong 001; Guillaume Huguet; Guy Wolf; Maximilian Nickel; Ian Adelstein; Smita Krishnaswamy (CISS, 2024)

CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation. - Chen Liu 020; Matthew Amodio; Liangbo L. Shen; Feng Gao; Arman Avesta; Sanjay Aneja; Jay C. Wang; Luciano V. Del Priore; Smita Krishnaswamy (MICCAI (8), 2024)

ImageFlowNet: Forecasting Multiscale Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images. - Chen Liu 020; Ke Xu 010; Liangbo L. Shen; Guillaume Huguet; Zilong Wang; Alexander Tong 001; Danilo Bzdok; Jay Stewart; Jay C. Wang; Luciano V. Del Priore; Smita Krishnaswamy (CoRR, 2024)

Geometry-Aware Generative Autoencoders for Warped Riemannian Metric Learning and Generative Modeling on Data Manifolds. - Xingzhi Sun 003; Danqi Liao; Kincaid MacDonald; Yanlei Zhang; Chen Liu 020; Guillaume Huguet; Guy Wolf; Ian Adelstein; Tim G. J. Rudner; Smita Krishnaswamy (CoRR, 2024)

Hyperedge Representations with Hypergraph Wavelets: Applications to Spatial Transcriptomics. - Xingzhi Sun 003; Charles Xu 004; João F. Rocha; Chen Liu 020; Benjamin Hollander-Bodie; Laney Goldman; Marcello DiStasio; Michael Perlmutter; Smita Krishnaswamy (ICASSP, 2025)

DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images. - Chen Liu 020; Danqi Liao; Alejandro Parada-Mayorga; Alejandro Ribeiro; Marcello DiStasio; Smita Krishnaswamy (ICASSP, 2025)

ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images. - Chen Liu 020; Ke Xu 010; Liangbo L. Shen; Guillaume Huguet; Zilong Wang; Alexander Tong 001; Danilo Bzdok; Jay Stewart; Jay C. Wang; Luciano V. Del Priore; Smita Krishnaswamy (ICASSP, 2025)