PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer. - Jiayu Shang; Cheng Peng 020; Xubo Tang; Yanni Sun (Bioinform., 2023)

PhaGenus: genus-level classification of bacteriophages using a Transformer model. - Jiaojiao Guan; Cheng Peng 020; Jiayu Shang; Xubo Tang; Yanni Sun (Briefings Bioinform., 2023)

GOPhage: protein function annotation for bacteriophages by integrating the genomic context. - Jiaojiao Guan; Yongxin Ji; Cheng Peng 020; Wei Zou; Xubo Tang; Jiayu Shang; Yanni Sun (Briefings Bioinform., 2024)

PhaGO: Protein function annotation for bacteriophages by integrating the genomic context. - Jiaojiao Guan; Yongxin Ji; Cheng Peng 020; Wei Zou; Xubo Tang; Jiayu Shang; Yanni Sun (CoRR, 2024)