Applying the genetic approach to simulated annealing in solving some NP-hard problems. - Feng-Tse Lin; Cheng-Yan Kao; Ching-Chi Hsu (IEEE Trans. Syst. Man Cybern., 1993)

A Genetic Algorithm for Database Query Optimization. - Jorng-Tzong Horng; Baw-Jhiune Liu; Cheng-Yan Kao (International Conference on Evolutionary Computation, 1994)

A Genetic Algorithm Approach for Set Covering Problems. - Wen-Chih Huang; Cheng-Yan Kao; Jorng-Tzong Horng (International Conference on Evolutionary Computation, 1994)

Using an Annealing Genetic Algorithm to Solve Global Energy Minimazation Problem. - Leuo-hong Wang; Cheng-Yan Kao; Ming Ouhyoung; Wen-Chin Chen (ICTAI, 1994)

A Combined Evolutionary Algorithm for Real Parameters Optimization. - Jinn-Moon Yang; Cheng-Yan Kao (International Conference on Evolutionary Computation, 1996)

Applying Family Competition to Evolution Strategies for Constrained Optimization. - Jinn-Moon Yang; Ying-Ping Chen; Jorng-Tzong Horng; Cheng-Yan Kao (Evolutionary Programming, 1997)

A Continuous Genetic Algorithm for Global Optimization. - Jinn-Moon Yang; Jorng-Tzong Horng; Cheng-Yan Kao (ICGA, 1997)

A New Evolutionary Approach to Developing Neural Autonomous Agents. - Jinn-Moon Yang; Jorng-Tzong Horng; Cheng-Yan Kao (ICRA, 1998)

Molecular binding in structure-based drug design: a case study of the population-based annealing genetic algorithms. - Chien-Cheng Chen; Leuo-hong Wang; Cheng-Yan Kao; Ming Ouhyoung; Wen-Chin Chen (ICTAI, 1998)

An Evolutionary Algorithm for Synthesizing Optical Thin-Film Designs. - Jinn-Moon Yang; Cheng-Yan Kao (PPSN, 1998)

Materialized view selection using genetic algorithms in a data warehouse system. - Jorng-Tzong Horng; Yu-Jan Chang; Baw-Jhiune Liu; Cheng-Yan Kao (CEC, 1999)

Resolution of simple plant location problems using an adapted genetic algorithm. - Jorng-Tzong Horng; Li-Yi Lin; Baw-Jhiune Liu; Cheng-Yan Kao (CEC, 1999)

Stochastic sketching: a new method for global optimization. - Ying-Ping Chen; Jorng-Tzong Horng; Cheng-Yan Kao (Soft Comput., 1999)

Materialized View Selection in a Data Warehouse Using Evolutionary Algorithms. - Jorng-Tzong Horng; Yu-Jan Chang; Baw-Jhiune Liu; Cheng-Yan Kao (GECCO, 2000)

Using Genetic Algorithms to Solve Multiple Sequence Alignments. - Jorng-Tzong Horng; Ching-Mei Lin; Baw-Jhiune Liu; Cheng-Yan Kao (GECCO, 2000)

A Genetic Algorithm for Physical Mapping Problems. - Huai-Kuang Tsai; Cheng-Yan Kao; Jinn-Moon Yang (GECCO, 2000)

An Evolutionary Algorithms to Training Neural Networks for a Two-Spiral Problem. - Jinn-Moon Yang; Cheng-Yan Kao (GECCO, 2000)

A Genetic Algorithm with Adaptive Mutations and Family Competition for Training Neural Networks. - Jinn-Moon Yang; Jorng-Tzong Horng; Cheng-Yan Kao (Int. J. Neural Syst., 2000)

Flexible ligand docking using a robust evolutionary algorithm. - Jinn-Moon Yang; Cheng-Yan Kao (J. Comput. Chem., 2000)

Integrating adaptive mutations and family competition into genetic algorithms as function optimizer. - Jinn-Moon Yang; Cheng-Yan Kao (Soft Comput., 2000)

A family competition evolutionary algorithm for automated docking of flexible ligands to proteins. - Jinn-Moon Yang; Cheng-Yan Kao (IEEE Trans. Inf. Technol. Biomed., 2000)

Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. - Hsien-Da Huang; Shu-Fen Fang; Jorng-Tzong Horng; Cheng-Yan Kao (BIBE, 2001)

Integrating adaptive mutations and family competition with differential evolution for flexible ligand docking. - Jinn-Moon Yang; Jorng-Tzong Horng; Cheng-Yan Kao (CEC, 2001)

Mining Putative Regulatory Elements in Gene Promoter Regions. - Jorng-Tzong Horng; Hsien-Da Huang; Cho-Chun Huang; Cheng-Yan Kao (German Conference on Bioinformatics, 2001)

A Genetic Algorithm for Multiple Sequence Alignment. - Jorng-Tzong Horng; Ching-Mei Lin; Bing-He Yang; Cheng-Yan Kao (German Conference on Bioinformatics, 2001)

Optical Coating Designs Using the Family Competition Evolutionary Algorithm. - Jinn-Moon Yang; Jorng-Tzong Horng; Chih-Jen Lin; Cheng-Yan Kao (Evol. Comput., 2001)

A Theoetical Aspect of a Stochastic Sketching Method for Global Optimization. - Jorng-Tzong Horng; Ying-Ping Chen; Cheng-Yan Kao (J. Inf. Sci. Eng., 2001)

A Robust Evolutionary Algorithm for Training Neural Networks. - Jinn-Moon Yang; Cheng-Yan Kao (Neural Comput. Appl., 2001)

Solving traveling salesman problems by combining global and local search mechanisms. - Huai-Kuang Tsai; Jinn-Moon Yang; Cheng-Yan Kao (IEEE Congress on Evolutionary Computation, 2002)

Applying Genetic Algorithms To Finding The Optimal Gene Order In Displaying The Microarray Data. - Huai-Kuang Tsai; Jinn-Moon Yang; Cheng-Yan Kao (GECCO, 2002)

A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. - Hsien-Da Huang; Huei-Lin Chang; Tsung-Shan Tsou; Baw-Jhiune Liu; Cheng-Yan Kao; Jorng-Tzong Horng (BIBE, 2003)

Ranking Genes for Discriminability on Microarray Data. - Han-Yu Chuang; Huai-Kuang Tsai; Yuan-Fan Tsai; Cheng-Yan Kao (J. Inf. Sci. Eng., 2003)

Automatically Predicting Possible Loci of Variable Number of Tandem Repeats. - Chia-Hung Chang; Han-Yu Chuang; Yi-Hung Chiang; Chien-Shun Chiou; Hsueh-I Lu; Cheng-Yan Kao (BIBE, 2004)

Identifying Significant Genes from Microarray Data. - Han-Yu Chuang; Hongfang Liu; Stuart M. Brown; Cameron McMunn-Coffran; Cheng-Yan Kao; D. Frank Hsu (BIBE, 2004)

Comparative Molecular Binding Energy Analysis of HIV-1 Protease Inhibitors Using Genetic Algorithm-Based Partial Least Squares Method. - Yen-Chih Chen; Jinn-Moon Yang; Chi-Hung Tsai; Cheng-Yan Kao (GECCO (2), 2004)

Combination Methods in Microarray Analysis. - Han-Yu Chuang; Hongfang Liu; Fang-An Chen; Cheng-Yan Kao; D. Frank Hsu (ISPAN, 2004)

Optimal Designs for Microarray Experiments. - Han-Yu Chuang; Huai-Kuang Tsai; Cheng-Yan Kao (ISPAN, 2004)

Exploring of Radiation Resistance from Bacterium Deinococcus radiodurans R1 by Amino Acid Compositions of Proteins: View from Comparative Whole Protein Sequences. - Chia-Wen Chang; Mao-Yen Chen; Wen-Chang Chang; Cheng-Yan Kao (METMBS, 2004)

Discovering Statistically Significant Clusters by Using Iterative Genetic Algorithms in Gene Expression Data. - Hua-Sheng Chiu; Han-Yu Chuang; Huai-Kuang Tsai; Tao-Wei Huang; Cheng-Yan Kao (METMBS, 2004)

A Tool to Determine the Specificity of Antisense Oligonucleotide. - Yu-Cheng Huang; Yu-Chih Chao; Shwu-Bin Lin; Huai-Kuang Tsai; Chun-Fan Chang; Sheng-An Lee; Cheng-Yan Kao (METMBS, 2004)

Disulfide Connectivity Prediction Using Support Vector Machine and Novel Features. - Chi-Hung Tsai; Huai-Kuang Tsai; Shih-Chieh Chen; Cheng-Yan Kao (METMBS, 2004)

Designing Multiple-Use Primer Set for Multiplex PCR by Using Compact GAs. - Yu-Cheng Huang; Han-Yu Chuang; Huai-Kuang Tsai; Chun-Fan Chang; Cheng-Yan Kao (PPSN, 2004)

POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. - Tao-Wei Huang; An-Chi Tien; Wen-Shien Huang; Yuan-Chii G. Lee; Chin-Lin Peng; Huei-Hun Tseng; Cheng-Yan Kao; Chi-Ying F. Huang (Bioinform., 2004)

Some issues of designing genetic algorithms for traveling salesman problems. - Huai-Kuang Tsai; Jinn-Moon Yang; Yuan-Fan Tsai; Cheng-Yan Kao (Soft Comput., 2004)

An Evolutionary Approach for Gene Expression Patterns. - Huai-Kuang Tsai; Jinn-Moon Yang; Yuan-Fan Tsai; Cheng-Yan Kao (IEEE Trans. Inf. Technol. Biomed., 2004)

An evolutionary algorithm for large traveling salesman problems. - Huai-Kuang Tsai; Jinn-Moon Yang; Yuan-Fang Tsai; Cheng-Yan Kao (IEEE Trans. Syst. Man Cybern. Part B, 2004)

GEMPLS: A New QSAR Method Combining Generic Evolutionary Method and Partial Least Squares. - Yen-Chih Chen; Jinn-Moon Yang; Chi-Hung Tsai; Cheng-Yan Kao (EvoWorkshops, 2005)

Improving EAX with restricted 2-opt. - Chen-hsiung Chan; Sheng-An Lee; Cheng-Yan Kao; Huai-Kuang Tsai (GECCO, 2005)

Compact genetic algorithm for active interval scheduling in hierarchical sensor networks. - Ming-Hui Jin; Cheng-Yan Kao; Yu-Cheng Huang; D. Frank Hsu; Ren-Guey Lee; Chih-Kung Lee (GECCO, 2005)

Sensor Network Design and Implementation for Health Telecare and Diagnosis Assistance Applications. - Ming-Hui Jin; Ren-Guey Lee; Cheng-Yan Kao; You-Rui Wu; D. Frank Hsu; Tse-Ping Dong; Kuan-Tsae Huang (ICPADS (2), 2005)

Compact Genetic Algorithm for Performance Improvement in Hierarchical Sensor Networks Management. - Ming-Hui Jin; Win-Zing Li; D. Frank Hsu; Cheng-Yan Kao (ISPAN, 2005)

A Study on Implementation of Southern-Min Taiwanese Tone Sandhi System. - Un-Gian Iunn; Kiat-Gak Lau; Sheng-an Li; Cheng-Yan Kao (PACLIC, 2005)

台語變調系統實作研究 (A Study on Implementation of Taiwanese Tone Sandhi System) [In Chinese]. - Un-Gian Iunn; Sheng-an Li; Kiat-Gak Lau; Cheng-Yan Kao (ROCLING, 2005)

A stochastic differential equation model for quantifying transcriptional regulatory network in Saccharomyces cerevisiae. - Kuang-Chi Chen; Tse-Yi Wang; Huei-Hun Tseng; Chi-Ying F. Huang; Cheng-Yan Kao (Bioinform., 2005)

Integrated minimum-set primers and unique probe design algorithms for differential detection on symptom-related pathogens. - Yu-Cheng Huang; Chun-Fan Chang; Chen-hsiung Chan; Tze-Jung Yeh; Ya-Chun Chang; Chaur-Chin Chen; Cheng-Yan Kao (Bioinform., 2005)

Improving disulfide connectivity prediction with sequential distance between oxidized cysteines. - Chi-Hung Tsai; Bo-Juen Chen; Chen-hsiung Chan; Hsuan-Liang Liu; Cheng-Yan Kao (Bioinform., 2005)

Cysteine separations profiles on protein sequences infer disulfide connectivity. - East Zhao; Hsuan-Liang Liu; Chi-Hung Tsai; Huai-Kuang Tsai; Chen-hsiung Chan; Cheng-Yan Kao (Bioinform., 2005)

Simple Software for Microarray Image Analysis. - Chaur-Chin Chen; Cheng-Yan Kao; Chun-Fan Chang; Hsueh-Ting Chu; Chiung-Nien Chen (CRV, 2006)

Combining Single-pass and Multiple-pass Heuristics for Group Flexible Flow-shop Scheduling Problems. - Pei-Ying Huang; Tzung-Pei Hong; Cheng-Yan Kao (SMC, 2006)

Compact Genetic Algorithm for Performance Improvement in Hierarchical Sensor Networks Management. - Ming-Hui Jin; D. Frank Hsu; Cheng-Yan Kao (J. Interconnect. Networks, 2006)

A genetic algorithm for resident physician scheduling problem. - Chi-Way Wang; Lei-Ming Sun; Ming-Hui Jin; Chung-Jung Fu; Li Liu; Chen-hsiung Chan; Cheng-Yan Kao (GECCO, 2007)

Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains. - Yao-Lin Chang; Huai-Kuang Tsai; Cheng-Yan Kao; Yung-Chiang Chen; Jinn-Moon Yang (IMSCCS, 2007)

Positioning System in Taipei Children's Museum of Transportation and Communication. - Tzu-Hsiang Chou; Ming-Hui Jin; Chi-Chung Chen; Cheng-Yan Kao (ISPA Workshops, 2007)

Portable Patient Information Integration System for Patient Safety Improvement. - Tu-Bin Chu; Ming-Hui Jin; Li-Xin Xu; Jong-Tsong Chiang; Cheng-Yan Kao (ISPA Workshops, 2007)

Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online). - Chun-Nan Hsu; Jin-Mei Lai; Chia-Hung Liu; Huei-Hun Tseng; Chih-Yun Lin; Kuan-Ting Lin; Hsu-Hua Yeh; Ting-Yi Sung; Wen-Lian Hsu; Li-Jen Su; Sheng-An Lee; Chang-Han Chen; et al. (BMC Bioinform., 2007)

Reconstruction of human protein interolog network using evolutionary conserved network. - Tao-Wei Huang; Chung-Yen Lin; Cheng-Yan Kao (BMC Bioinform., 2007)

Modeling Taiwanese Southern-Min Tone Sandhi Using Rule-Based Methods. - Un-Gian Iunn; Kiat-Gak Lau; Hong-Giau Tan-Tenn; Sheng-An Lee; Cheng-Yan Kao (Int. J. Comput. Linguistics Chin. Lang. Process., 2007)

VNTRDB: a bacterial variable number tandem repeat locus database. - Chia-Hung Chang; Yu-Chung Chang; Anthony Underwood; Chien-Shun Chiou; Cheng-Yan Kao (Nucleic Acids Res., 2007)

Evolutionary Conservation and Interacting Preference for Identifying Protein-DNA Interactions. - Yao-Lin Chang; I-Hsin Liu; Cheng-Yan Kao; Jinn-Moon Yang (IMSCCS, 2008)

利用統計方法及中文訓練資料處理台語文詞性標記 (Modeling Taiwanese POS tagging with statistical methods and Mandarin training data) [In Chinese]. - Un-Gian Iunn; Chia-Hung Tai; Kiat-Gak Lau; Keh-Jiann Chen; Cheng-Yan Kao (ROCLING, 2008)

中文名詞組的辨識：監督式與半監督式學習法的實驗 (Chinese NP Chunking: Experiments with Supervised, and Semisupervised Learning) [In Chinese]. - Yen-Hsi Lin; Zhao-Ming Gao; Cheng-Yan Kao (ROCLING, 2008)

Evolutionary conservation of DNA-contact residues in DNA-binding domains. - Yao-Lin Chang; Huai-Kuang Tsai; Cheng-Yan Kao; Yung-Chiang Chen; Yuh-Jyh Hu; Jinn-Moon Yang (BMC Bioinform., 2008)

Ortholog-based protein-protein interaction prediction and its application to inter-species interactions. - Sheng-An Lee; Chen-hsiung Chan; Chi-Hung Tsai; Jin-Mei Lai; Feng-Sheng Wang; Cheng-Yan Kao; Chi-Ying F. Huang (BMC Bioinform., 2008)

Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory Networks. - Tse-Yi Wang; Kuang-Chi Chen; D. Frank Hsu; Cheng-Yan Kao (BIBE, 2009)

POINeT: protein interactome with sub-network analysis and hub prioritization. - Sheng-An Lee; Chen-hsiung Chan; Tzu-Chi Chen; Chia-Ying Yang; Kuo-Chuan Huang; Chi-Hung Tsai; Jin-Mei Lai; Feng-Sheng Wang; Cheng-Yan Kao; Chi-Ying F. Huang (BMC Bioinform., 2009)

Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis. - Shun-Fu Chen; Yue-Li Juang; Wei-Kang Chou; Jin-Mei Lai; Chi-Ying F. Huang; Cheng-Yan Kao; Feng-Sheng Wang (BMC Syst. Biol., 2009)

Modeling Taiwanese POS Tagging Using Statistical Methods and Mandarin Training Data. - Un-Gian Iunn; Jia-hung Tai; Kiat-Gak Lau; Cheng-Yan Kao; Keh-Jiann Chen (Int. J. Comput. Linguistics Chin. Lang. Process., 2009)

MetaABC - an integrated metagenomics platform for data adjustment, binning and clustering. - Chien-Hao Su; Ming-Tsung Hsu; Tse-Yi Wang; Sufeng Chiang; Jen-Hao Cheng; Francis C. Weng; Cheng-Yan Kao; Daryi Wang; Huai-Kuang Tsai (Bioinform., 2011)

A quantitative analysis of monochromaticity in genetic interaction networks. - Chien-Hsiang Hsu; Tse-Yi Wang; Hsueh-Ting Chu; Cheng-Yan Kao; Kuang-Chi Chen (BMC Bioinform., 2011)

Construction and analysis of the protein-protein interaction networks for schizophrenia, bipolar disorder, and major depression. - Sheng-An Lee; Theresa Tsao; Ko-Chun Yang; Han Lin; Yu-Lun Kuo; Chien-Hsiang Hsu; Wen-Kuei Lee; Kuo-Chuan Huang; Cheng-Yan Kao (BMC Bioinform., 2011)

A Multiclass Classification Tool Using Cloud Computing Architecture. - Chia-Ping Shen; Chia-Hung Liu; Feng-Sheng Lin; Han Lin; Chi-Ying F. Huang; Cheng-Yan Kao; Feipei Lai; Jeng-Wei Lin (ASONAM, 2012)

The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes. - Chien-Hao Su; Tse-Yi Wang; Ming-Tsung Hsu; Francis Cheng-Hsuan Weng; Cheng-Yan Kao; Daryi Wang; Huai-Kuang Tsai (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Differential network biology reveals a positive correlation between a novel protein-protein interaction and cancer cells migration. - Chia-Hung Liu; Tzu-Chi Chen; Chun-Houh Chen; Cheng-Yan Kao; Chi-Ying F. Huang (EMBC, 2013)

EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection. - Hsueh-Ting Chu; William W. L. Hsiao; Jen-Chih Chen; Tze-Jung Yeh; Mong-Hsun Tsai; Han Lin; Yen-Wenn Liu; Sheng-An Lee; Chaur-Chin Chen; Theresa Tsao; Cheng-Yan Kao (Bioinform., 2013)